Gene detail

Detailed information of ENSLDHP00000036307.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: CAB3997953.1, volume-regulated anion channel subunit LRRC8A-like [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Sequence

CDS

ENSLDHT00000039550

ATGTTTGCTCTCAGCAATATTTCAAGGTTTGAACATGAAAAGGATACTTGCAAGATTCTCAAACCAGTCTGGGATGTCATTACAGATTATCTTGTTGTTTTCTTGGTAGTGTTGTCCGTTGCATTCGGAGGTATGCAAGTTACGTCTGGCACTTTTGAATGCTTGGCTGCTGTTCATTGCTCAGGCATATCAAGGTCAAATATGAGCAGCTCCTTGTTGTCACATATTAAATATCGTAATGTTTGTAAAGCATTTTACAGTTCTCAGAAAACCAACGTTATCAAAGGAACAGACGTCGTGACAGACCTTAAAAGCAGTTTTCAGTATACCAGTTTTGTCAACTCTGAATGCAGTAAAAGTGCTGTTCCAAATTTTCTTTCCTATTTTGGGTTTGTGTTATTTATTCAAGCGTTTGTCCTCGTTGTACTTGATAATCTGTGGCTTAAACTCCCTAATATTGCATCAGTTCTTGAAAATTTTGTAGCCCTTGTTATGGAATGTTATGCTTCACCATACCCAAATTTCACGTTGACACATGCTCTATCAGACATGCCTACAAGACGTCATGCAGATGATCAGCAGCGAGATGACATCAATATCGAAATGGCAGGTCCCGTCTGTGACAGTGATAGTGACGGGGAGAAATCTTATGAATTAAATATTTTGGATGATCCTGCAACGATCAGTGCAATTAAAACTTTGTATGAAAAAGTAGATACACTCAAGAAAAATGTTAAATCGTCTCATAAAATTTGGCAATTATATTTGCTTCAAGCCATATGTCAAGCTGTATTTTCCATCCTCTTCTTGGTTGTGGATATTTACTTCATCAAGGATTTGCAAGAAACAATGACCTGTACACTTACTCAACACATCCCTGTGGTTCATGATCACTTTATTTGTTCTCATAACCTTGCACCTGCATTTGCTTTGGGATTGAAATGGATGTATCTTCCAACGTTAGTGATTACTTTTggtgtttttatttttatcataGCATGGACGGTTTTGAGAAAAGGTAAAAACAAATTTCAATATATCTTCGATGAGAAAAGATTGCCTTCTCTGGTAGGAATTATCTTGTCTGATATTCCTTCAGTTAACCAAGATTTTGGTTTTCTTCTGCACCTATTGCACTcctataataaattatatgtggttcgatttgcccattttttgtcTAAAaagagcaaaaagaaaattcaagCATTTTATTTGAAGTGGAAATACCCTGTCAGAGATTTAGAAAGACAATTGAAGGAAAATggaaataaactaacttttacTGACATTCAAGGAATACCAGAAACCATATTTAAACTTGCTACAGAAATTGTAACACTTGAAATGGTAGAATGCAAATTACAAAACGAAGACTTTGAAAACTTTTGTCAGCTTACCAGCCTAAGAAAGTTGTCAATTATTAAATGTCGTCTTAAATCCATTCCACAGGATATTTTGGACATTGAATTGTTGGAAGTACTTAATCTCAAAGGAAATTTTTTGACATCAATTAATCCAAGCATATCCAATTTACAGAATCTGATTACTTTGGATTTATCAGACAATAATTTGGAAACCATACCCGAATCAGTTGAAAACCTTGCCAATCTTCTTGCAGTTTACCTATCAGGcaatttaaaattacaaatggCAGCATTAAAGGTTGTACTAGCATGTGAAAGATTGCACATTATGCATTCCCCTCGACATCTTTCAGATAGAAAGAACGAGTTAAATCCATTGGAAAGAGCGAAATTTGATGCTGTCAATGTTGCCGGGACAGGACATTTTGTTATTCCATACACACCTGAGGATGCTCCTCATATTGATTTAGGGGATCAtgagaaaatttataaaatggACTCTAGTCCTAAAGGAATAGCTATCATCATTAACAACTATTCATACGTCAACTGTCAAAATAAAGGCATACTCCTAGATCGAAAAGGTAGTGAGAAAGATGTTGCTATGTTGAAGTCATTATTTGAGAAAATTGGTTTTGACACCGTATGTTGTATAGACAAAACAGCTAAAAAAGCTGAGGCGTTCGTAGAAAAATATGCAAAAAACGAAAAATACAAAGACTGTGATTGCATTATTTTGGTTATAATGAGTCACGGTAGTGAAGAAGGTCTTACTTTTCCTGATGGCGAAGTGCTGGATGTCATGCGTCTAGTTCAATCTGTTCAAGAGTCTCCATTTTACCAAGAAAAGccgaaattatttttcattcaagCTTGCAGAGGAAGTCAAAATGCTGGCGGTCTTGCTAATTCGACTCCTCGTTCCGAAGTAACAAATGCAGATTCTTCTGATAATGTTGCATCAGTATCCAATGAAAACACAGTGGATTCCGTACGTCATGATCATGATGCTGTTGCTGATTCGCTTCCTGCAAATACAATAGATGCATCATCCGCACACGTCATGACTGAACTTCCACCCATACCAGAAGGAGCTGATATTTTGCTATCATACTCTACTATGTATGGATACACCGCAATTCGTAACACCAAGTTTGGTTCATGGTATATACGTGCTTTAGTCGAGACATTTTGCGAACATGCTTGGGAAGAAGATATTCTAAGTCTGCTTACACTGGTTAACTACAAGGTTGTTCgtgcctgcactcaagctggaTGGAGACAGGTACCAGCTCCACAAAGTACTTTAAGGAAAAAACTGTACTTACTTCCAAGGTATACAAGTCAGTCCAGGTCAGTCGAACCAACTTTTACTCATAATTCGCTGAAAGAAGGAATCCACCAAATTGAGTATATCGCTTTGTTCCAAATACAGCGTAGCCAGCATTCTTCTCCAACTTCACTCAGAATGTATCATCCTTTGCCAAAACCACAAGAAAGGTTTTCGACAGCTGATCATAATTTTTATGGTTTGCATGCATATCACCGACAACGTTGCTCCCCTTCATCATTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5PK13	Volume-regulated anion channel subunit LRRC8C OS=Bos taurus OX=9913 GN=LRRC8C PE=2 SV=1
Q8IWT6	Volume-regulated anion channel subunit LRRC8A OS=Homo sapiens OX=9606 GN=LRRC8A PE=1 SV=1
Q8TDW0	Volume-regulated anion channel subunit LRRC8C OS=Homo sapiens OX=9606 GN=LRRC8C PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001346 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00656 all species →	Peptidase_C14	Caspase domain	Domain	Interproscan
PF12534 all species →	Pannexin_like	Pannexin-like TM region of LRRC8	Family	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001309 all species →	Domain	Peptidase C14, p20 domain	Interproscan
IPR015917 all species →	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR002138 all species →	Domain	Peptidase C14, caspase non-catalytic subunit p10	Interproscan
IPR011600 all species →	Domain	Peptidase C14, caspase domain	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR029030 all species →	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR021040 all species →	Domain	LRRC8, pannexin-like TM region	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR033139 all species →	Active_site	Peptidase family C14A, cysteine active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47901 all species →	CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSLDHP00000036307.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.