Genomic Location: chr5:786070...789127
NR annotation: CAB3993962.1, lambda-crystallin-like [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families
| CDS |
| ENSLDHT00000039694 |
| Protein |
| ENSLDHP00000036448.1 |
| UniProt accession | Description |
|---|---|
| P14755 | Lambda-crystallin OS=Oryctolagus cuniculus OX=9986 GN=CRYL1 PE=1 SV=3 |
| Q9Y2S2 | Lambda-crystallin homolog OS=Homo sapiens OX=9606 GN=CRYL1 PE=1 SV=3 |
| Q99KP3 | Lambda-crystallin homolog OS=Mus musculus OX=10090 GN=Cryl1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004210 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02737 all species → | 3HCDH_N | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | Domain | Interproscan |
| PF00725 all species → | 3HCDH | 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006176 all species → | Domain | 3-hydroxyacyl-CoA dehydrogenase, NAD binding | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR006180 all species → | Conserved_site | 3-hydroxyacyl-CoA dehydrogenase, conserved site | Interproscan |
| IPR006108 all species → | Domain | 3-hydroxyacyl-CoA dehydrogenase, C-terminal | Interproscan |
| IPR008927 all species → | Homologous_superfamily | 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily | Interproscan |
| IPR013328 all species → | Homologous_superfamily | 6-phosphogluconate dehydrogenase, domain 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48075 all species → | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006631 all species → | Biological Process | fatty acid metabolic process | Interproscan |
| GO:0070403 all species → | Molecular Function | NAD+ binding | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0050104 all species → | Molecular Function | L-gulonate 3-dehydrogenase activity | Interproscan |
| GO:0016616 all species → | Molecular Function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13247 | CRYL1; L-gulonate 3-dehydrogenase | EC:1.1.1.45 | Pentose and glucuronate interconversions | ko00040 | deepkoala |
Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
