Genomic Location: chr5:34654816...34661703
NR annotation: CAB3995630.1, ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families
| CDS |
| ENSLDHT00000039729 |
| Protein |
| ENSLDHP00000036483.1 |
| UniProt accession | Description |
|---|---|
| Q5U2U0 | ATP-dependent clpX-like chaperone, mitochondrial OS=Rattus norvegicus OX=10116 GN=Clpx PE=2 SV=1 |
| Q9JHS4 | ATP-dependent clpX-like chaperone, mitochondrial OS=Mus musculus OX=10090 GN=Clpx PE=1 SV=2 |
| O76031 | ATP-dependent clpX-like chaperone, mitochondrial OS=Homo sapiens OX=9606 GN=CLPX PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004148 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07724 all species → | AAA_2 | AAA domain (Cdc48 subfamily) | Domain | Interproscan |
| PF10431 all species → | ClpB_D2-small | C-terminal, D2-small domain, of ClpB protein | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003959 all species → | Domain | ATPase, AAA-type, core | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR019489 all species → | Domain | Clp ATPase, C-terminal | Interproscan |
| IPR004487 all species → | Family | Clp protease, ATP-binding subunit ClpX | Interproscan |
| IPR050052 all species → | Family | ATP-dependent Clp protease ATP-binding subunit ClpX | Interproscan |
| IPR010603 all species → | Domain | Zinc finger, ClpX C4-type | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48102 all species → | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0006457 all species → | Biological Process | protein folding | Interproscan |
| GO:0051082 all species → | Molecular Function | unfolded protein binding | Interproscan |
| GO:0140662 all species → | Molecular Function | ATP-dependent protein folding chaperone | Interproscan |
| GO:0005759 all species → | Cellular Component | mitochondrial matrix | Interproscan |
| GO:0051603 all species → | Biological Process | proteolysis involved in protein catabolic process | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0046983 all species → | Molecular Function | protein dimerization activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03544 | clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX | - | Chaperones and folding catalysts | ko03110 | deepkoala |
Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
