Detailed information of ENSLDHP00000036666.1 in Eunicella cavolini

Genomic Location: chr4:1372725...1401325
NR annotation: CAB3990985.1, RANBP2-like and GRIP domain-containing 2 isoform X1, partial [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7Z3J3RanBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens OX=9606 GN=RGPD4 PE=1 SV=3
Q99666RANBP2-like and GRIP domain-containing protein 5/6 OS=Homo sapiens OX=9606 GN=RGPD5 PE=1 SV=3
P0DJD0RANBP2-like and GRIP domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RGPD1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003339 (this species only) · gene tree & orthology
Ubiquitin familyUBD|ZnF|NZF · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00641
all species →
zf-RanBPZn-finger in Ran binding protein and othersDomainInterproscan
PF12185
all species →
IR1-MNup358/RanBP2 E3 ligase domainDomainInterproscan
PF00638
all species →
Ran_BP1RanBP1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000156
all species →
DomainRan binding domainInterproscan
IPR001876
all species →
DomainZinc finger, RanBP2-typeInterproscan
IPR036443
all species →
Homologous_superfamilyZinc finger, RanBP2-type superfamilyInterproscan
IPR045255
all species →
FamilyRan binding protein RanBP1-likeInterproscan
IPR011993
all species →
Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR022011
all species →
DomainNup358/RanBP2 E3 ligase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23138
all species →
RAN BINDING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046907
all species →
Biological Processintracellular transportInterproscan
GO:0005096
all species →
Molecular FunctionGTPase activator activityInterproscan
GO:0005643
all species →
Cellular Componentnuclear poreInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12172RANBP2, NUP358; E3 SUMO-protein ligase RanBP2EC:2.3.2.-
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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