Genomic Location: chr4:891628...894145
NR annotation: XP_028412694.1, uncharacterized protein LOC114535614 [Dendronephthya gigantea]
Species Eunicella cavolini · all data for this species · gene families
| CDS |
| ENSLDHT00000040175 |
| Protein |
| ENSLDHP00000036929.1 |
| UniProt accession | Description |
|---|---|
| Q04786 | Beta-hexosaminidase OS=Vibrio vulnificus OX=672 GN=hex PE=3 SV=1 |
| P13670 | N,N'-diacetylchitobiase OS=Vibrio harveyi OX=669 GN=chb PE=1 SV=1 |
| Q54468 | Chitobiase OS=Serratia marcescens OX=615 GN=chb PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000971 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03173 all species → | CHB_HEX | Putative carbohydrate binding domain | Domain | Interproscan |
| PF00728 all species → | Glyco_hydro_20 | Glycosyl hydrolase family 20, catalytic domain | Domain | Interproscan |
| PF02838 all species → | Glyco_hydro_20b | Glycosyl hydrolase family 20, domain 2 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR025705 all species → | Family | Beta-hexosaminidase | Interproscan |
| IPR004866 all species → | Domain | Chitobiase/beta-hexosaminidases, N-terminal domain | Interproscan |
| IPR015883 all species → | Domain | Glycoside hydrolase family 20, catalytic domain | Interproscan |
| IPR029018 all species → | Homologous_superfamily | Beta-hexosaminidase-like, domain 2 | Interproscan |
| IPR015882 all species → | Domain | Beta-hexosaminidase, bacterial type, N-terminal | Interproscan |
| IPR008965 all species → | Homologous_superfamily | CBM2/CBM3, carbohydrate-binding domain superfamily | Interproscan |
| IPR017853 all species → | Homologous_superfamily | Glycoside hydrolase superfamily | Interproscan |
| IPR012291 all species → | Homologous_superfamily | CBM2, carbohydrate-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22600 all species → | BETA-HEXOSAMINIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004563 all species → | Molecular Function | beta-N-acetylhexosaminidase activity | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0004553 all species → | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0030203 all species → | Biological Process | glycosaminoglycan metabolic process | Interproscan |
| GO:0030246 all species → | Molecular Function | carbohydrate binding | Interproscan |
| GO:0030247 all species → | Molecular Function | polysaccharide binding | Interproscan |
ENSLDHP00000036929.1.Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
