Detailed information of ENSLDHP00000037047.1 in Eunicella cavolini

Genomic Location: chr4:42352573...42354923
NR annotation: XP_028400993.1, E3 ubiquitin-protein ligase RNF168-like isoform X1 [Dendronephthya gigantea]
Species Eunicella cavolini · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8IYW5E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens OX=9606 GN=RNF168 PE=1 SV=1
B2RYR0E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus OX=10116 GN=Rnf168 PE=1 SV=1
Q0IIM1E3 ubiquitin-protein ligase RNF168 OS=Bos taurus OX=9913 GN=RNF168 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006588 (this species only) · gene tree & orthology
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097
all species →		zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018957
all species →		DomainZinc finger, C3HC4 RING-typeInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR051657
all species →		FamilyRNF168/RNF169 E3 ubiquitin-protein ligaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23328
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006302
all species →		Biological Processdouble-strand break repairInterproscan
GO:0031491
all species →		Molecular Functionnucleosome bindingInterproscan
GO:0035861
all species →		Cellular Componentsite of double-strand breakInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSLDHP00000037047.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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