Gene detail

Detailed information of ENSLDHP00000038443.1 in Eunicella cavolini

Genomic Location: chr5:2291862...2309210
NR annotation: CAB3978306.1, Rho GTPase-activating 20 [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSLDHT00000041829

ATGTCAACGTTTGTGTCGCCTCGGTCAAGTCCTGTGCTCAAACGAAGATCGACTAGTCGACTTAAAATTCTTCCACAAAAGGTTGGAGACTCTAAAGAAGATTTGTTTAGACTTATTGAAGTTCAAGATAAATTTCCTCATGATGATCTGGGGTTGGATGAAGAGAAGAGGTTGTCTAATCAGaaattaaaaactttactaAATTCACGACGAAGATCAGCACCTGCCACCGCTATTAAAGCTGCCTTTGGCATGACCAGCAAGAATAGTGTTCCTTCCATTGATATATCCCTAACAATCCACTCAGAACCCACACCAGACTCACCACAACCCAGCAGTATATTTGTCCATGAAGGAATGGTGCAGTTAACAGCGGGTAGCCTTTCTCACGATCGTTACATGTTTCTATTCAATGACTTTCTTCTTGTGGCAAAATCCAAATCGTCATCATATTACAAGTTAAAAGATCGAATCAATGTGAGTGAAATGTGGATTGCTGGCTGTATTGATGATGTGGCAGACAACGTGAAATCTCCAGAAAAATCTTTTGTACTTGGCTGGCCAACTGAGAACTTTGTTGCTTCTTTCAGTTCGATGGAAGAGAGGAACAAATGGCATGAAGCTTTAACAAGcaATATTGCGTCGCAAAAGGAATTAGAAGAACCGAAAACAACACCTATCAAAATCCAGTACAAAGATAATGAATCTGTTCAGAGTTTGACAAAGAGTGTGTCAGTTGGTCAGTTGGACGACGCGAACAAGGTTGTGCAGATGGCGCTGGAACTTTTTAACATTTTGAATAAGGAAAATTCAAATGATCATCAGTTATGGGTTATGTACAAGGATGGCGCATATCCCCTTATTGGTCACGAATTTCCATTCGCGATTCAAATGAACCAGCATCGTGAAATGTCAATACTTGATGACAGTGATTTTATCGTACCAGTTCCAGACCCCCCAGCCTCACCACCTGCAATTGAAATCACACCTGAAAATCAACTTCATTTTATGTTGAAAAAGGGACGAAAAATGCACCATAAAGTTGGTCTCAATCGTCTGGTGAAAATGAGAAAGAATAAGAAATTGAATAAAAAGATATCTGGGAGCAAATTACCACCTTATGATATGATCATGGCTCCTGGCAAAGTGTTTGGGCAACCTTTGGAACAATTGACAAGTGAAGAAGAGCTGGTTCCCAAGCCTATCAACGATCTGTTAGTACGACTGTTTCGCTACGGGCCATCAACATCTGGTGTTTTTCGAAAGACACCGAATCAACGAGAAGTCAAAGAACTGAAAGAAGAAATCGATGAAGAAAAAGAAGTATCTTTTGAAGATACCTCCGTTCATGTGGCTGCAGGATTAGTAAAGGAATTTCTTCGCAACCTTCCTGATGCGCTGTGCTGTTCTGAATACTACGAAGATTTTCTAGCCACTAATGACATCAAGGATAAGTCTGAACGAGTCCAAGAGATCACAAGACTTGCAGAAAAACTTCCTACCGCTAACTTGGAATTAATCAAACGTTTCTTGTGCGTGCTATGTCACATCTCTCAAAACAGCGAACAAAATAACATGACGTCATTTAACTTAGGCGTCTGCGTTGCTCCTAGTATACTTAAGCCAGCGGAGTCTGTGAAAGCTGAAACCGCTGAGCAAGCTAAGAGTACCGCACCTCAATTCGTGGAATTCATTATAGACAATTTTCGTGAAATCTTTGGCGAAGATGCTGTTACGGTTTTGGGTGATATTTCAGAAATAATTGTCGATGTTCCGACTGTTATCGAGAATGGAGACTCCCCCGAAGAATCCCGACCAAGAAGCCAATCATTTCATCAGAGCGATTCAAGTATATATAAAAGTGCGAACGAAGGGGATAAAACAGAACAAACGGAGAATTTGTTGACAGTAAAGGATAATAATGCTAACCTAAGCAAAAGTACCCCCAATTCACCTAAAGTACAACGAAAATCTGAAAAAAGTTTGGACCCTAACGATATTTCGAAAAAGATCCACTCGGCATTTTATCATCCAAAACATTCGCCAAGGTATATCAGACGAAACTCAGATAAATCATCAAGAACTGAATCGGAAAAACGTCGGAATGCCGAACGACCAGGAAATGAATCCGAACGGTCACGAAAGAAACCCGTCGTACTTACGACGACGACGTCGAGTGCCGAACTTATCGAACATGTCCCGAATGATAGTATGAGGTTATCGACCAGTTGCAGCTCGTTATCTGCTGCCAGGCCTGAACCCGCAGTGGTCAAGAAGACATCTGCTCCAAAACGGGAAGGCATGTTATTCGCATCCAGTAAAAGTTTTTATAGTGCGCCTGCATATATTGCTGAACGCGTAAATACAGTGTATGACAGGCGCAGACAGCCTGCGGCACCATCGTATCAGGAGCATATGCAACGGACCAGAGCCCAAAAAGGTCTGGCCGTTCAAAAAGGTCTGAATGTCCAAATACCAAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6REY9	Rho GTPase-activating protein 20 OS=Rattus norvegicus OX=10116 GN=Arhgap20 PE=1 SV=2
Q6IFT4	Rho GTPase-activating protein 20 OS=Mus musculus OX=10090 GN=Arhgap20 PE=1 SV=1
Q9P2F6	Rho GTPase-activating protein 20 OS=Homo sapiens OX=9606 GN=ARHGAP20 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001712 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR047887 all species →	Domain	ARHGAP20, PH domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23179 all species →	T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSLDHP00000038443.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.