Gene detail

Detailed information of ENSLDHP00000039234.1 in Eunicella cavolini

Genomic Location: :...
NR annotation: CAB3999254.1, tyrosine- phosphatase non-receptor type 23-like [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSLDHT00000042860

atgagtggagacAACGAGAGAATTGAAtccacgatctcagagGTTCAAAATTATTATACAGAAGCCATTGCTTGCTTGACATCTTCTTTTGGAGAAATACTACCACCCAGAATGCACAAGcaTTGGAGCAAGACTTTACAAATTAAATGTGCATATTTAAATGCACTGGCTTACATGTATATGTCAAACACATCCGATGAACAGGGCAAATACGGAGAGAAGGTGGCATTTTTAAAGATAGCTGCACAAAGAATCGCTGAGGCACAGAAATTATTGAAGAATCAAAGTCAACAAGTACAGGAAGTGGTTCAATTCATCACAGATGCTGTCACTCAGAAACTAGAAGGTGCCAAGCGTGACAATGACTTTATTTACCATGAACCAGAACCAGCGTCCACTGCTTTGCCCGAAATTAAAGGTGCGTCTCTGGTGAAACCGATTCCTTTTCAACCTTATGATCCTTCAATGGGAAAAGatatctttgaaaaactcattcCAATGAAAGCTCATGAATCTTCCTCCTTATACAGCGAGGAAAAAGCGAACCTGTTACGTCGTTATGCCAGTATTGTGAGTGAAAAAGACAAGGAATTAAGTTCATGGCTGGCTTCAATGCATATTGATGATCTGTTGCGACCAGAAGAAGCAGATAATCTTCCTGCTGATCTTACAACAAAGTGCGAATCATTGCAGTCCAATCCTGGCGCAATCAAAAAATCTATGGAAATGCTGACAAAACTGAAAGAAAAAGGCGCAGAGCTGGAAAAAATATTGGCTGAAGCACGAAAAGAAATTATTGATGTTCAGAATGAAAAAAAGACTTTTATGGAGAAATATAATGTTAAGCTGGAGGAAGATAAATTGAAAGAGTGTCTTGACGAAGTTAACAGCTACCAACAAAAACATGTTGATGCCAAAAAGACAAATGACGAACTGGAGAAAGCGTTCGGGGCTCATCGTGAAAATTTGGAACTAATGATCGGACCAGAGCAAGCTTTGCATGGAATATTACCCTCACAAAATATTTTGGATTCTCCTATTGAAGACGATGCTGTTCAACGAATCAGAGATCTTTTGGCCAAAATCGAGAAAATGAAAACTCAGAGGGCTCAAATTTTGGAGAAATTAAGAGAACAGGTGAACAAAGACGATATTACTCATCTCATTGCAACAAGAGAAGGCGATGATCTTGAGAGCTTATTTAAGGAAGAACTTAAGAAACACAACGAGTCGTGTGAATTACTGCAATGTAATCTCGATGCACAGGAGAAAATCATGAAAGCTTTGACTGAAGCAAATGCGAAGTATGCTCATGCTCGCAGGTCTGTGGCTGAAATTAAAGCAAAACGCGATGTCGTTGTTAAAAGCTTAATTGGTTCTTATGATTTCTTCATGAATTTCAAAGATAAAGTCAGTAGCGGAGTCACCTTCTACAACCAATTGTCGGAGATTTTTGAAAAGCGTCGACAAGAAATTACCACCATTTGTAAAAGCGAGAACGAAAGATTACAAAAGATCGTAGACAAAGCAAAGCAATTAAAAGAAGAGCGAGAAAAAAAGTCTGAACCCAAAGTTGACGCTACATTATCCAATACTATCCCACCAGAAAGACGAAGCAACCCTGGCAATCCCCAGCGCACACCTCCTGTTGGATATCCGCCTCCACAGGGTCATGTCCCTCACCACCCTCTGTCACACCAAGCTATACCTCATTCACTTCGTGGCCCTGCTCCAAATCAGCCTCCTCCCATTCAATCTGGGCACCCAGCTCAGTTCAACCACCCACCCCGTCCCCCAAGTAATCAACCTGGGATGTCCCAATATATCCCCAGAGTACCTTCAGCAACCTTACTTACTGCCAGACCCAGAATGTCCTATCCACACCCTCCATTCCCCGCAACTTCCCAGGAGGGACTTCGCCTACCAACGTCAGTATCATGGCAACCACCCCTGAGGCCAGGTGATACCTCTCCAACCGCAACTGGTAATATCCGATTTCCACCATCACAAGGGATCAGGCCACCAAATGTGCCACAAGGACCATCTCTTCCCCCACAACAGCTCCCAGGGAGACCTCAGTTAGCCATGCATAACCCTCAAGGTCAGGTCTTTCAACATGGTCAAGTAGGAAGTGGCAGAGGCAACTGGCAACCACAGCAGCATGGTAAAGGATCATATATGATACCACAACGACCTATGGTACCTCAACAGCCTGTAATCTCACAACAACCAAGAGCTGCTGGTCAACAACCTTCGCAGCAGAGACCACCATCCCAAGTATTACCAGCAGTTCAACAGCACCAGCTGCCACCACAACAGCTACCACAGACGTTACCACAACAGCCAGCACGGCCAGAAACGCCACCGTCGCCACAAAAAATCCAACAACCCTACCAATCAAACCCACCCTCTTACCAACAACAGTTTGGAATTGGTTCAAGTCAGCAACTGAAAGGCCCTGGTCCTCAACACTTACAACAAGTACCTCAACAGCAACCAGGTCCATACCAGAACCCTAGTGGTCAACCACCACATGCTGGTCAAAGACCTGGCCAGTACCAGCAACAGCCTGGACAACAATCCATACCCAACCAACCATCAAGATCTCGCCAGATACCAACAGCATACCAGCATCAGCCACCAATACGAATGCCACCACTAAGCATTCAGCAACCAATACATCAACCCTTACAACACGCATTACCACCAGGCAGCAATCAAGTACCTCCTCAACAACAACCGCAATCAACTCGACCACCACATCACCAACCACCACCACAACACCTACCACCACAACAGCAACATCCAGGAGCACCACCGCAGCAACCAGCTGGTCAGTACCATCAACTTGGTCCCTACCACCAACGTTTCCCATACCAGCCACAACAACAGTCTGGTGTGTCTCACCATCAAATAGTTTCACAGCACACCCACCAACAAGGGTTCCAAGGTCCTGCCCGTACAGGTCCTCTCCCACATCAGCAAAGACCAAACCAGCAACCTGGGCAGCATATACCCCCAGTACAAAACCCACCACCCACTCCATATCATCAATTGCCATCCTCACAGGTTCCCCACAATCTTCCTCCAGCACTAGCACCACAGTCATATCAAAAACAGCCGTTGATACAAAAAATTTCTTCGGAAAATTTACCTCAAAAACAACGGGGTCCTTATCATCCTGCTCAAAATCCCCCGCCAGAATCATGCAGTCAGCCATTAATGCAAGAAAAGGTTCCTTATCAAACCAACCAGCAGGAAAGGCCTGTCAATCCGCCAGCTCAGCTACCATATAGTAGTCCAGCGCTACCATCTCAAACACAAAACACGGACAAAATGCATCCAAACCCATCACAAGATAAGCTTAGTCAATTTCAGCAACCATATTATAATCAAACATCTGAGAGTCAGTATCCTCCGGTACCAACAAGCCAGCAACAACCGGCAAGACAAACAGGTGGCCAAAGCAGTTCAGGGTATATAAACCAACAATGGCAACAACAGCAGTACAGACCAACATCGCCTCATCAACACACCACCACTCCACATCCGCAAACGAACAAAACTGTTCAGGACCCCAATATTTCGAAACCTGGGGTGTACTCTTCTGCATCAGCTTACCCTGTCCCCTCATCAACTCATAACGTCTCTCAAACACCACAGGAAAACCGACCAAGTGACCCCCCACCTAATATTTCTAAGCCAGCGGTGTACCCCTCTTCGAACCCTTCCTCCCAGATCGGATCTAGTGTATCCTCAACCTACACTCACCCTACATCAAGTCATAACTTCCCTCAAATATCGCAAGAAAATCGACCAAGTCAACAAGTTGATCCTTTTTATATTTCGAAACCTGGCGTGTACCCTTCCCCCTCCTCCCAAGGTATACCCACTCAACATCCCCCTTCAACCTCAAATGAAAACGTCACTCAAACACAGCAGGACCCACCTCCGAACACCCACAACCCAAATCCATCTCATGATACAATGTCGCAATATTTCCCCGCAGTTTGTAGCCAAGCATCACAACCTTACTCGACAGAAAACCAACCAACTGACAATGTTACAAAAGGTTCTGGTTTATCCACTGATCCTAATTTCCGTTCAAGGTCTATCCAAGAATTTAGTCCTACCAAGGTTGTGTTATCTAAACCCGGTGCGCTGTCAGTAAGCCCTTTGCCAGGCAGTCCGTCAGCCACGACGACTAAACAGGATTTTGAGAGCGGTTCTGCACCTGGTACACAGTCTGGGCAGCAATATGACGTAAGCCTCAGTGGACCGAGTCATAATGAAGTGAGTCATTTTGACAGTACTGTGTACACCCAAATTGGCCCTGCTGGTCACACCACTCCAATAAATACTACTCACTTGAGTATTAGTAAACCTAAATCAACGATAGATGATAAACTGTTGGAAAACCTTAAGTCGCTTGACTCCCCACAACCGTTACCTTCTAAACAACGAGAGAACCCGACTCCAGTTAAAAGTACGGGATCAGAAATCGTCGGAACTAATGTCCCAGAATCAGGACCAAATCCTGCACGATCGAAGATTCCTGATTCCAATAACCTTGGATCAACTAATGAAGGATTAATTAATGCTGGATCAGGTACCACGGATACTTCAACCTTGGCTCGCTCGTCGAGTCAAGAAGATGTACACAAACTGCAACAGAAAGTTTTGCTTCAACAACAGCAGTTGATAGAACAACAACAGCGCTTCCTAGAGCAACAAACACTAGGGGAACATTCCCAAGTTTGGAAGTTAATGGAACAAATAAAACAACAGCAAAAAGAATTAGAAGAACTAAGAACTGAAATGAAAGTCAAAGATCAATTTGGTGAAATCGAAAGGCATTTGGAGAACTTAGAACGAAGACAGAATGAAGCAGTTTTGAGAAAAACTGCAGGAATAAAATCTGATGGAGTCTTGGAGGAACCAAAAGGACCAGAGTCGGGAAAACTTCCCGACGAATTCCATGACAATAATAAGGAGGGTGACAAGGAAATGAATGATCAAAATAAAGAAAGTAAAACTTTGGAGATGGAGCAAAAGCCGGTCGACAAGACAACACAAGATCAATTGAGTGAAATTACTAGTGAAGTTGACAGTGAAGCGCAAGTCAGCAGCGAACCTCAAGGGGTGAAGGAAGATTTCTTAATGAGTCAGTTAAGTCAATTTTCATTAACATCTTCAGAGCACAGCAACGTGACTATAGGTTCAACTGAAGAACCTGCAAGCATGCGTGAACCAAGTGCTGAAGTAAAAACTGATACTTTGTCTGATGACGCACCACCGAAACCATCAAGAATGCCTCAAGGTAAACCGAACATTACGACTTCAGAAAAATCAGAAGCTTTACCCATAACTAGTACTCCTTCGTCGTCTAAAGCAGACGCAACAATCCTAAATCAAGAAACAAATATGATGTCAAACCTAGGAGTGTTTGATCCTTTAGGAGAGAAACAAGCTCCCCCACCAAAACCATTCAAACATCGCCCCCCACCTCCAACGCCCGAGGCTCACCCCCAGACACGCTCAGAGGTAAGCCAGGCTACCCGAGACGTGTTTACGAAACCCACACTTGGCCCAGATGTGGTTAGTGGTGATAAGTCAAGCGAGAAAAGCGATGAAGGAGATTACGTGTCGCGACTGGCAGTCTTGATTGAAAATTACCGAGATGTTGTGAATAATTTAACCAAGAGACAAGCTCGTGGTCCGAGTATTCTCACTAAAGAATGGCTGGCTCTTCAACATTATCAGGATACAGTGTGCCAAGTACTGACTTGTGATGTTGGAAAGAATAACACGACTAAAAATAGATACTTGGATATCTTACCATATGACCAGACAAGAGTTATTCTACAAGACAAAGAAGACTCGGATTATATTAATGCTACCATGATAGAGGACTTAACGCCTCTTTCTCCAAAATACATTGCGAGTCAAGGACCGATCCCGCAATGTTTTATGGACTTTTGGTTGATGGTGTGGCAACAGAAATGTCCGTTGGTTGTTATGTTGACAAAAGAAGTCGAGGGAAAGAAGCTAAAGTGCCATCAATACTGGCCTAAAGATGAAGGATATTCGATGCTTTTTGGATCCCTTAGAGTAACCATGAAACGCCAAACATCCCTTGCATTTTGGAAGGAAAGAATTATTCACATCACTCACAATGAGACTAACGAGCTTCATGTTGTTGAGCACTATCAATTCACTGGTTGGCCTGATCATGGTGTTCCAAGCAACCCATCAGATTTCTTCACCTTTATGGGTCATATTTATATCCGTCATCAAACTATTGATCCTGATGTGAAGAAACCAATCTTACTTCACTGCAgTGCTGGCGTTGGTCGTACAGGTGCTTTCATCGTTATTTATTCCGCCATGAGAGAAATGTATTCTGGAAATGGAATAGTGGAAGTGCAGAAACTGGTGCAGAAACTGCGAGAGAAAAGAAAATTTATGGTTCAGAAAAAGGAACAGTACGAGTTTTGTTACAAAGGAATCTTATATTCTGCTGAACAGTTTCTTATAATAGAGAATAGCGGCCATACTGCCGGAGGAGACAGCTGTGATTCTATGTCCTCATCAGATGATACCTACTCATTTTCATCTGACGACGAAGCTGAATATGTGAAACCTGTCGTACCTCAGCGTGTTCGCACTTCTCAGAATCAGAGAGACGTTTCTGGAAATAACAGTGAGGACAAGCAAGAAGGCAAGAAAGATGATTCCAGTAATCTGGACTCTGAGCAGGCTTCTGGGAGTCAATTTAAATCGAATTCTGGGAAAAATGATTCCATCTCTCAGAAAAGTGAATTGGTTTCTGAAAAACCTGAAAGCACTTCCCAGAAAGGTGACCAAAGTTCTCGAAAAGCCCACAACGTTGAAGGAAGTCTTGAA

Transcript

Protein

ENSLDHP00000039234.1

MSGDNERIESTISEVQNYYTEAIACLTSSFGEILPPRMHKHWSKTLQIKCAYLNALAYMYMSNTSDEQGKYGEKVAFLKIAAQRIAEAQKLLKNQSQQVQEVVQFITDAVTQKLEGAKRDNDFIYHEPEPASTALPEIKGASLVKPIPFQPYDPSMGKDIFEKLIPMKAHESSSLYSEEKANLLRRYASIVSEKDKELSSWLASMHIDDLLRPEEADNLPADLTTKCESLQSNPGAIKKSMEMLTKLKEKGAELEKILAEARKEIIDVQNEKKTFMEKYNVKLEEDKLKECLDEVNSYQQKHVDAKKTNDELEKAFGAHRENLELMIGPEQALHGILPSQNILDSPIEDDAVQRIRDLLAKIEKMKTQRAQILEKLREQVNKDDITHLIATREGDDLESLFKEELKKHNESCELLQCNLDAQEKIMKALTEANAKYAHARRSVAEIKAKRDVVVKSLIGSYDFFMNFKDKVSSGVTFYNQLSEIFEKRRQEITTICKSENERLQKIVDKAKQLKEEREKKSEPKVDATLSNTIPPERRSNPGNPQRTPPVGYPPPQGHVPHHPLSHQAIPHSLRGPAPNQPPPIQSGHPAQFNHPPRPPSNQPGMSQYIPRVPSATLLTARPRMSYPHPPFPATSQEGLRLPTSVSWQPPLRPGDTSPTATGNIRFPPSQGIRPPNVPQGPSLPPQQLPGRPQLAMHNPQGQVFQHGQVGSGRGNWQPQQHGKGSYMIPQRPMVPQQPVISQQPRAAGQQPSQQRPPSQVLPAVQQHQLPPQQLPQTLPQQPARPETPPSPQKIQQPYQSNPPSYQQQFGIGSSQQLKGPGPQHLQQVPQQQPGPYQNPSGQPPHAGQRPGQYQQQPGQQSIPNQPSRSRQIPTAYQHQPPIRMPPLSIQQPIHQPLQHALPPGSNQVPPQQQPQSTRPPHHQPPPQHLPPQQQHPGAPPQQPAGQYHQLGPYHQRFPYQPQQQSGVSHHQIVSQHTHQQGFQGPARTGPLPHQQRPNQQPGQHIPPVQNPPPTPYHQLPSSQVPHNLPPALAPQSYQKQPLIQKISSENLPQKQRGPYHPAQNPPPESCSQPLMQEKVPYQTNQQERPVNPPAQLPYSSPALPSQTQNTDKMHPNPSQDKLSQFQQPYYNQTSESQYPPVPTSQQQPARQTGGQSSSGYINQQWQQQQYRPTSPHQHTTTPHPQTNKTVQDPNISKPGVYSSASAYPVPSSTHNVSQTPQENRPSDPPPNISKPAVYPSSNPSSQIGSSVSSTYTHPTSSHNFPQISQENRPSQQVDPFYISKPGVYPSPSSQGIPTQHPPSTSNENVTQTQQDPPPNTHNPNPSHDTMSQYFPAVCSQASQPYSTENQPTDNVTKGSGLSTDPNFRSRSIQEFSPTKVVLSKPGALSVSPLPGSPSATTTKQDFESGSAPGTQSGQQYDVSLSGPSHNEVSHFDSTVYTQIGPAGHTTPINTTHLSISKPKSTIDDKLLENLKSLDSPQPLPSKQRENPTPVKSTGSEIVGTNVPESGPNPARSKIPDSNNLGSTNEGLINAGSGTTDTSTLARSSSQEDVHKLQQKVLLQQQQLIEQQQRFLEQQTLGEHSQVWKLMEQIKQQQKELEELRTEMKVKDQFGEIERHLENLERRQNEAVLRKTAGIKSDGVLEEPKGPESGKLPDEFHDNNKEGDKEMNDQNKESKTLEMEQKPVDKTTQDQLSEITSEVDSEAQVSSEPQGVKEDFLMSQLSQFSLTSSEHSNVTIGSTEEPASMREPSAEVKTDTLSDDAPPKPSRMPQGKPNITTSEKSEALPITSTPSSSKADATILNQETNMMSNLGVFDPLGEKQAPPPKPFKHRPPPPTPEAHPQTRSEVSQATRDVFTKPTLGPDVVSGDKSSEKSDEGDYVSRLAVLIENYRDVVNNLTKRQARGPSILTKEWLALQHYQDTVCQVLTCDVGKNNTTKNRYLDILPYDQTRVILQDKEDSDYINATMIEDLTPLSPKYIASQGPIPQCFMDFWLMVWQQKCPLVVMLTKEVEGKKLKCHQYWPKDEGYSMLFGSLRVTMKRQTSLAFWKERIIHITHNETNELHVVEHYQFTGWPDHGVPSNPSDFFTFMGHIYIRHQTIDPDVKKPILLHCSAGVGRTGAFIVIYSAMREMYSGNGIVEVQKLVQKLREKRKFMVQKKEQYEFCYKGILYSAEQFLIIENSGHTAGGDSCDSMSSSDDTYSFSSDDEAEYVKPVVPQRVRTSQNQRDVSGNNSEDKQEGKKDDSSNLDSEQASGSQFKSNSGKNDSISQKSELVSEKPESTSQKGDQSSRKAHNVEGSLE

Uniprot

Uniprot term	Description
Q6PB44	Tyrosine-protein phosphatase non-receptor type 23 OS=Mus musculus OX=10090 GN=Ptpn23 PE=1 SV=2
O88902	Tyrosine-protein phosphatase non-receptor type 23 (Fragment) OS=Rattus norvegicus OX=10116 GN=Ptpn23 PE=1 SV=2
Q9H3S7	Tyrosine-protein phosphatase non-receptor type 23 OS=Homo sapiens OX=9606 GN=PTPN23 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13949	ALIX_LYPXL_bnd	ALIX V-shaped domain binding to HIV	Domain	Interproscan
PF03097	BRO1	BRO1-like domain	Repeat	Interproscan
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038499	Homologous_superfamily	BRO1 domain superfamily	Interproscan
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR045251	Family	Vacuolar protein-sorting protein Bro1-like	Interproscan
IPR025304	Domain	ALIX V-shaped domain	Interproscan
IPR004328	Domain	BRO1 domain	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23030	PCD6 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0005768	Cellular Component	endosome	Interproscan
GO:0032456	Biological Process	endocytic recycling	Interproscan
GO:0043328	Biological Process	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan
GO:0045022	Biological Process	early endosome to late endosome transport	Interproscan
GO:0071985	Biological Process	multivesicular body sorting pathway	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan