Genomic Location: chr5:35244153...35251402
NR annotation: XP_028411256.1, RNA polymerase II elongation factor ELL-like isoform X1 [Dendronephthya gigantea]
Species Eunicella cavolini · all data for this species · gene families
| CDS |
| ENSLDHT00000043553 |
| Protein |
| ENSLDHP00000039816.1 |
| UniProt accession | Description |
|---|---|
| P55199 | RNA polymerase II elongation factor ELL OS=Homo sapiens OX=9606 GN=ELL PE=1 SV=1 |
| O08856 | RNA polymerase II elongation factor ELL OS=Mus musculus OX=10090 GN=Ell PE=2 SV=2 |
| Q5XFX8 | RNA polymerase II elongation factor ELL3 OS=Rattus norvegicus OX=10116 GN=Ell3 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006362 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07303 all species → | Occludin_ELL | Occludin homology domain | Domain | Interproscan |
| PF10390 all species → | ELL | RNA polymerase II elongation factor ELL | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR010844 all species → | Domain | Occludin homology domain | Interproscan |
| IPR042065 all species → | Homologous_superfamily | E3 ubiquitin-protein ligase ELL-like | Interproscan |
| IPR031176 all species → | Family | ELL/occludin family | Interproscan |
| IPR019464 all species → | Domain | RNA polymerase II elongation factor ELL, N-terminal | Interproscan |
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23288 all species → | OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000987 all species → | Molecular Function | cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0008023 all species → | Cellular Component | transcription elongation factor complex | Interproscan |
| GO:0032968 all species → | Biological Process | positive regulation of transcription elongation by RNA polymerase II | Interproscan |
| GO:0042795 all species → | Biological Process | snRNA transcription by RNA polymerase II | Interproscan |
| GO:0006368 all species → | Biological Process | transcription elongation by RNA polymerase II | Interproscan |
ENSLDHP00000039816.1.Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
