Detailed information of ENSLDHP00000040099.1 in Eunicella cavolini

Genomic Location: chr6:16316147...16429946
NR annotation: CAB4002163.1, WD repeat [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9USN3Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp13 PE=3 SV=3
Q95RJ9F-box-like/WD repeat-containing protein ebi OS=Drosophila melanogaster OX=7227 GN=ebi PE=1 SV=2
O42469Transducin-like enhancer protein 1 OS=Xenopus laevis OX=8355 GN=esg1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006514 (this species only) · gene tree & orthology
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF17908
all species →		APAF1_CAPAF-1 helical domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR041452
all species →		DomainAPAF-1 helical domainInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR020472
all species →		RepeatG-protein beta WD-40 repeatInterproscan
IPR050995
all species →		FamilyWD repeat and F-box domain-containing proteinInterproscan
IPR011047
all species →		Homologous_superfamilyQuinoprotein alcohol dehydrogenase-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14604
all species →		WD40 REPEAT PF20Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSLDHP00000040099.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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