Genomic Location: chr5:34770294...34774163
NR annotation: CAB4016161.1, Geranylgeranyl transferase type-1 subunit beta [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families
| CDS |
| ENSLDHT00000044656 |
| Protein |
| ENSLDHP00000040810.1 |
| UniProt accession | Description |
|---|---|
| Q5EAD5 | Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus OX=9913 GN=PGGT1B PE=2 SV=1 |
| P53609 | Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens OX=9606 GN=PGGT1B PE=1 SV=2 |
| P53610 | Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus OX=10116 GN=Pggt1b PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004983 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00432 all species → | Prenyltrans | Prenyltransferase and squalene oxidase repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR045089 all species → | Family | Prenyltransferase subunit beta | Interproscan |
| IPR001330 all species → | Repeat | PFTB repeat | Interproscan |
| IPR041960 all species → | Family | Geranylgeranyl transferase type-1 subunit beta | Interproscan |
| IPR008930 all species → | Homologous_superfamily | Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11774 all species → | GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004662 all species → | Molecular Function | CAAX-protein geranylgeranyltransferase activity | Interproscan |
| GO:0005953 all species → | Cellular Component | CAAX-protein geranylgeranyltransferase complex | Interproscan |
| GO:0008318 all species → | Molecular Function | protein prenyltransferase activity | Interproscan |
| GO:0018342 all species → | Biological Process | protein prenylation | Interproscan |
| GO:0018344 all species → | Biological Process | protein geranylgeranylation | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0004661 all species → | Molecular Function | protein geranylgeranyltransferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11713 | PGTB1; geranylgeranyl transferase type-1 subunit beta | EC:2.5.1.59 | Prenyltransferases | ko01006 | deepkoala |
Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
