Gene detail

Detailed information of ENSLDHP00000040894.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: CAB4002163.1, WD repeat [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Sequence

CDS

ENSLDHT00000044760

ATGCTTGAAAAGAAATCTCTGATTCAAAAAGGACCTGAACTCCAGGGGAAGACAAGCTATCGTGTCCATGATCTGCTTTTGGAATTTGCCCGGACGAGACTTCGAGCCACAGGCACACTAACTGATGTTCAGTGCTTATTCGTGAAGACACTTCGTGGTCAATGCGTAAACGGTGAATGGACTGAAACTTCAAGTGCCAACCAAAAGGACTATTACTTCAAGTACTTACCCTACCACCTCCACTCCTCGAAACAATCTAATGAACTTGTTCAACTGTTCTTTGACTTTTCCTGGTGTGAACAGAAAGTGAAACAGACCAATTTGCCATCCTTAATATCGGATTTTCGTTTCTTGGACACGCCTTCGAAGGATATCAAACTTCTCAAATCGTCTTTGATGCTATCTGGCGATGCCATCGAGAAAAACCCGGATTCTATTGGCCCGCAACAGCTGGATAGATTGCAGTCGTGGGCTGACGAATACCCGAATGTAAAGAAACTGTTGAAATCCGTCCGTGAAATGTGCATGAAGACTTGCCATCTTTTGCCATTATTTCCCTGTCTCGACGCCGTTGGAGGGCCTGAGATATCTAGAAAGAACTTTGAAAGTGAAGTATATTCATTAGCAACGTCCAATACTCCAGCTGGTACTATTGTCATTTCTGGTTTGGGAAACTGTTCGATCAAGATCCATGAACTAGAAACAGGCAAACAAGTCCAAAAGCTTAAAGGACATATAAGCATAGTGAGGTGTTTGGCTCTGTCGCACATTGGAACAATACTTGCGTCAGGATCGTGGGACAACACTACTAGACTATGGGACATGAAGAGTTATGAACAACTTTTTGTGTTACAAGGAGAAAGTGATGTGCGTGGATTGGATTTTAGTGCAGATGATGAGCGCTTGTTTACTGGATCGAGAGATGGGCGACTGAAAGTGTGGCGTGTGGCCGACGGTGAACTGTTGAATGACATTCATGCACATGATCAATATATTTGGGACCTGTGTACCACCAAAGATGGACAGTACATCGCTACTGCATCGGATAACAAGACCATCAAGGTTTGGAAAGCTGATACATTAAATCTTGAAGCTACTTTGGTTGGCCATACTTCTGACGTGAGGTGTGTAGTGGCAACAGATCCAGGAAATGACAATCCAATGCTTGTGTCTGGTTCATGGGATGGAACTTTAAAAATATGggatttaaaaacatatcaagAAATTCGTACCCTCAGTGGTCATAAAGGCTGGATCTATAGTGTCGCTGTTAGCGCGGATACGAAGCATATTATCTCTGGGGGAGAAGATATGATTGTGAGATTGTGGTGCTTCCACACTGGAAAACTACTTTCCTATTTTGAAGGCCACAACAACGATATCCAGTGTGTGACCATTACTTCAGATGGGTCGAAAGCGTTGTCTGGGTCCTGGGATTCAAGTGTCAGAGTGTGGGATCTAAACTCTAGTGCGTACTTGAAACAAGACAGGTCACGTGGTCACTTAGAATGCGTCACTGACATTGCAATGACATGTGATGGCTCAAGGTGTGTTTCAGCTTCCAGAGATGGgactttgaaaatttggaattgtgAGACCGCAGAAAAATGCTTTACTTTGAGAGGTGACAACAGAGAAGCTGACAACAAAAAAGCAGATAATGTAAAAGTTGCAATCTCTGCTGATGGTCGCCATGTCGTGTCGCTGTCGTTCAATACCTGGTCGACGTCAAGCTCGATAAAGGTTTGGGACTTGCTTAAAGGCAGTGAGATTAATGGAATTGACAGCGTTAAACAACCTCGGATAGTTCGCTTCAGTTCTGACGGGACACAAGTTATAATTGGATGCAGGAACAACCGTGTTTCTATCTGGGATTGGCAGAACCGTGACGCGCCTTTGAATAATGTCATCTTACCCGCGTGCGACACAGTGGAAATTACATGCGATGGCAACATGATTTACACGTGTAGCAGTAGTATGGTCGTTTGTCAAATCGATCTTGGCTCACTAAAAGTGTCGATTGTTTGTCAAAGGCCTGTGGTTATATTACCAGACGGAGAAGCTATATTGTCTGGGATATTTACAGATAGTTCGTTTGTTTGCGAGGAACTTTCATCTAAACGTCAAATCAAATATAATGCAGGTCATTCTGACGACTCGATAATTACTGCTATCGACATCACATCGAATGGGAAATTAGCTCTGTCCGGAACCAATTCAGGAACTATATCGCTGATGAACTTGGAGAATTCCAACATAGTTCAGACGTTCGCAAAGACCGAACCTGGCGTCGGCATACGTTTCGTTAACGTTTTAAGTGATGATGCcagttttgtatttgttgatgaaacaaataCAATGGAATTAAGAACTTTTGACAATAACAAAGCTGGGATAGTGTTGGGTCAACCACATGTTAAAGTGACCTGCATTACTACTCTTGGCCTACACTATGTATTGATTGGTTGTGAAAGCGGACAAATattattgtttaatttacatCTTAAACAATACCAGTATGAACTTCATGCTCATTCAGAAGCCGTTTCTCAAGTTAAAAGCAACCCAAGAGATATTTTTCTTCGCTTTGCATCGGGGTCTGTCAGTGGGTCGGTGAAACTTTGGAGATTTGTAGAAACTGTGCCGCCTTCGTTCATGGCAGTTTGGTCACATGACAACATTCACCCGAATGCCATTACCGCCCTAGCATTTGTGCCCAACTCCGAGGACATCGTGATCGGTTCCTGCTATGACAACAAGGTTCATCGGATAAACGCTGCTGAAATTTCGCGTACGTACTATTGCAGTTTTGATTGGCAAACAACAGAGTCATTGCGTGTAGTGGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D4AZ50	Nuclear distribution protein PAC1 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=PAC1 PE=3 SV=1
D4DG66	Nuclear distribution protein PAC1 OS=Trichophyton verrucosum (strain HKI 0517) OX=663202 GN=PAC1 PE=3 SV=1
Q9M3B4	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009301 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF17908 all species →	APAF1_C	APAF-1 helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR041452 all species →	Domain	APAF-1 helical domain	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22847 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSLDHP00000040894.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.