Gene detail

Detailed information of ENSLDHP00000041246.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: XP_028409524.1, intersectin-1-like isoform X2 [Dendronephthya gigantea]
Species Eunicella cavolini · all data for this species · gene families

Sequence

CDS

ENSLDHT00000045185

ATGTCAgGAAATACGTGGGTTGTAACAGCGGATGAGAGGCAAAAACATGAGACAGCATTTCTGTCACTCAAGCCATCAAATGGACGGATAACAGGTGAACAAGCCAAAAAATTCTTTTTATCCTCAAATTTACCACCTGCTACACTGGGTCAAATATGGAATCTGTCAGATTTAGACAAAGATGGTCAGATGACTCAACAAGAGTTCAACATTGCCATGCATCTGATTCAATGCAAACTAAAAGGCATCAATCTTCCCACTTCTCTCCCCCTGAGTCTCAAAACATCATCACGAGGCAATGCTGGAGCTTCTTTACTTAATCCTGTTGAAAATGGCTTCAATACACAATCAGCTAGTCAGACCACTGGTTGGTCATCAACCGTCTCATCTGGCTTGCCATCACAATCTGCAACTGGGTGGTCTGTGGGGCTTGCCTCCAGTTTACCCCCACCATTACTTCCAGTGAACAATCAAATGCAAACCTCGGCTGCCCCTGTTACCTCAAGACTTCCAACATCTTCATCACATAATTTCACACCAAGTTTTGGGTTACCAACATCCAATGGTCTTGGCATGTCATCAATCCCCATGTCAGCACCAATGCCGTCAGTTAACCCAGCGTTGTCTCCCATGACAATGCCTGTGTCGACAATGTCGGGTGTGGGCCAGTCAATGAGACAACACCCTGCTGCTAGGACAGGGTCATTCACCAATATTCCCCCGACAGCTGGTCTGTCAGGAGATACGTCCATTTCTGATATCCAAGCTAATTCAAGACTCAAATTTAATCAACTGTTTAAAGCAAATGACTATGATAGAACTGGATTTTTAACTGGTGAACAAGCCAGAAAGATATTTCTACAGTCACTTCTACCTCCACCAGTTCTTGCCCAGATTTGGGATCTTAGTGATGTTGACAAAGATGGCCAGTTGAGCATGGAAGAATTTGCAATTGGTATGCATCTTGTCGAGTCTGCTAAGAGTGGCAAACCTCTTCCATCAAGTCTTCCCCAAAGCTTACTGCCTCAGCAGTTCAGGAAAAGTAGGTCTGAGAGTATAGAGTCTGAGAACATGGAGGGTATGCCTGGAGGTCAGATACCACGCCAGAGATCTGTCAGCTCGTCAAGTGCTAACGATGAGCTCGCTTTCCTCAGATCAGaaacatttgaagACAAACGTAAGCAGAACTTTGAGAGAGGAAGATTGGAACTGGAAAGAAGACGTCAAGAAGTGGAAGAACAGAGAAAGAAACTGAAAGAGGAACAAGAACGAAAGGAAAGATTAGAAGAAGAAAGACGACAGCGGGCTAAAATGGAGGCGGAACAGAAGAGGCAAGCTGAGATAGAGAAACAACGTAAACAACAGGAAGAAATGGAGAGAGAACAAGAAGCATTGAGAAAGAAAATGATACAACAACGATTGcaAGCTCAAATAGAAGCGGAAAGGCAACGACAACTTGAATGGGAGAAACGAAAGAAAGAAGAACTGTTAAATCATAAAAGTTTAGAAAAAGATATTGTGACTGGATTACAAGTTAGGAAAGATAAGATGGTCTTCGAGAGAGAAAATTTGGAGAAAAAGATGGAGTCAGTGCGTGAAGACCTCAGAAAGCAAAAGAAGTTCTACGCAGATTGTATTGCAGCAACCGATGCCTTGATTAAATCACGCGAGCGAAAAATTGCCGAGATTGCAGACAtagaaaacaaaagaaaaCTTTGTAAACAGCAGTTACCAGGTATTAGCAGTGAACATGATCGGTTGCAAAGAGAATTAAACAAACGCGAGTCAAGTATCATGGATGAGGCGTACGGAAATGCTCTATCCAGTATTGAAGATACAACTTGCGGCATTCGTAGACAAGTGTcgaataaaaataatttaacaaGTGAACTAGAAACTAAGAGAAAAATGATGACTCAACTGAATGATCAATTAAAGCAAATCCGTACAGAACTTCAGAGTCAAATGGACGAGAATAATTCATTGCGGCAATCATTGGAGGTGAAGAAAAATGAACATCAGGCAATGAAACAGAGACAAGAGGAAGAACGCAAGAGAAGACAAGAAGAAGAATCGAGGTTGAAAAGAGAAGCTGAACAGAAACGAAAGAAAGAGGAGGAGGAGAGAAAACAGAAAGAACGAGAAATGGAAGCAATGCGTCTCGAGCGAGAAAGACAACGTCAGGAACAGGAACGAAGACAGAAACTACATGAACAGAAAATGGAGGAAGACAGACAGCGCAAGAAACTTCAGGAACAACAACTATTGGAACTGGAAAGAAAACAGAAAGAACAACAACGTATTGAAGAAGAAAACCAAAGAAAGATTCAAGAACAACAAAGACTTGAACAACAGAGACAGGAACAACAACGATTAGAACAAGAACGGCAAAGGCAACAAGAACAGCAACGTGTTGAAAAAGAACGACAACGTAAACTACAAGAAGCAAGAGAAGCAAAGAAACAAGTACAATTACGACAAGAAGATCTTGTGAACAAAGACAAAATCGTACAAGAACAAGCGACATTGTTGGCGAAGCCGCGGAAGCCAACTAAACCAGCGCCTTATAACAAAGCTGAGAAAGAGGCTGAAGTAAGAAAGAAAGTTCAGGAAATGCAGAGAATACGAAATGAACAGAAAAAGGAAAAGGAGGCAGCACCACCCCCACCGACAACAGAATCGTTCAGAAATAAGAAGGAATTCTACAaagttgtctatttattttccCCAAGAAATCCTGATGAACTGGAGTTAAACGAAGGGGATCAGGTTACGGTTTTCCCCGACAGACCTAAAGTTCCTCCAGGATGGTTGTTTGGTTCATGTAAAGACAAGGAAGGATTATTCCCGGCGAATTACGCTGAGAAACTACCTGAAAGTAAAGGAGATTATGTTGAATTGAACCCGTCAAGTTCCTCCACTCCTGCTCAGCCGGCTGGACGTTCCGTTAGCTCAATCATCGCAGCTTTAAACAGTCAAAAGGAATTACCTATTGCTATGCCAGTTGCTGTAGCGCCTGAGACCAACGAGACGAATCAGACACCTGCAACTACACCTACCAACCAGAATTCTACAGTATTTCCGGAAGGTTTACAAGCAGTTGCATTGTATCAACATCGTGGCAAGTCAGACGATGAACTGAGTTTTAATAAAAACGACATCATTACTTTGAAAGAACAAAAAGACATGTCATGGCTTGGGGAGTGCAATGGAAAGACTGGTTGGTTTCCAAAATCTTATGCGAAACTTGTAAGAGGACAGAGACGCGGAGAGGGAAGTGTGAGTGAAGCATCATCTGAAAAGTCTTCAGTTCAAATTCCTTCACCTGGCTCATCGGCTTTCAAGGAAGTGACAGAAAACCGTCCTAGTGAACCTGCGATAATTGGAGAATGCGTTGCGTTATACACGTATAGCGGTGAAGCGGGTGATCTGAGTTTCCAGGAAGGTGACGTCATTGGTATAACGAAATCCGATGGTGATTGGTGGGAAGGAACGTTGAATGGACAAAAAGGAATCTTTCCTGCTAACTATGTGAAGATGAAAGAGGCCGAGGTACAAAAATCTTCAACAAAACGACCAGAAATCGCTACAGTGACTACAGCATACACAGCTACAGGTCCTGATCAACTGTCGTTAGTTCCTGGACAATATATTGCAGTGAAAGCCAAGAATGCCAATGGTTGGTGGGAAGGACAACTTCAGGCTCGTGGTAAGAAACGTCAGTCAGGATTGTTTCCCGGCAACTGTGTCAAGCTGCTTAGTAGTGGAGGCAATGCAACCCCAACAGCAACAAATAATGATTCTCTCAATGCAAATGATGCAGCGAGAAGTGGCTCAAATACTCCGCAAGATGATATGATATATTCTGTTCCAAGTTCAAACAAACGAGCAGACACCTTAGATCAAGTATTAGCCATGTTCTCATACACGGCGCAGAATACAGATGAACTGACTTTCTACAAGGGAAGTGTAATAACCGTGTTGAACCGAGAGGGGGACTGGTGGCAAGGAGAGCTTAATGGTCAGGTTGGAGTGTTTCCTAATAATTATGTTCAACCGCTGGCCGACCTACCCACGACGACACAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15811	Intersectin-1 OS=Homo sapiens OX=9606 GN=ITSN1 PE=1 SV=3
O42287	Intersectin-1 OS=Xenopus laevis OX=8355 GN=itsn1 PE=1 SV=2
Q9WVE9	Intersectin-1 OS=Rattus norvegicus OX=10116 GN=Itsn1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002086 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF12763 all species →	EF-hand_4	Cytoskeletal-regulatory complex EF hand	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR000261 all species →	Domain	EH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11216 all species →	EH DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0042734 all species →	Cellular Component	presynaptic membrane	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0097708 all species →	Cellular Component	intracellular vesicle	Interproscan
GO:0150007 all species →	Biological Process	clathrin-dependent synaptic vesicle endocytosis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20045	ITSN; intersectin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.