Gene detail

Detailed information of ENSLDHP00000041267.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: CAB3985563.1, Leucine-rich PPR motif-containing, mitochondrial [Paramuricea clavata]
Species abbreviation ECAVO · all data for this species · gene families

Sequence

CDS

ENSLDHT00000045210

ATGCCAGAGAAAAGAACTAAACTTGTCAAACGATTTTGGTCTGAACTGAAAGAGAAAGGTATCCAGTTTGATGTGAGTCATTACAATGTGCTACTCTCAGTGCATCTACAAAATCACCATTCATTCATTCCACTGGAAATTTTGGAAGAAATGAAGAATAGTGACATTGAACCTAATCAAACAACCTTAGTACTTTTTATTCAAGCCTTCTGTGAAAAGGGAGATATGGACGGATCACTTGAAATGTTGGGTATGATGAAGAAACTGGATGTTCCAGTCACGGAACAAGTTTATGCATCACTGATTACTGGCTACAGCCGAAGCGGAGACATGGAAAGTGCACTTGGCATTATTGAAACAATGAGAGGGAATGGTTTAGAACCTGGCTTGGACACATACATGTCATTATTGACTGCATACAGTGAAGCAGGAGATGTTGAAAATATTAGAAAGGTTGTTGCTGAGTACACTGAAAAGAAAGGCATGTGTACAGTTGGAATGCAAATGGCCATTGTTGAAGCATTAGCAAGAGCAAAACATTTCTCTCTTATTCCAGAGATTTTGCAAGAAATGAGCATTAACCAATTGGTATTCAACAGCGAGTTGATCAATGTATTAAAGAATTTGATAGCTCGAGGTCAGCATGAAAATGGTCTTGACTTACTTCAAGTCCTGCCCAGGAATCGTATGGTGGACAGTAAACAAATGTCTGTGCCTGAAGTAGAGTTTGTGAGACAACTGGTCCTCTCTATCCAGGAGCCTAAAATGTTGATTTCAATGTTGAAGAAGGTAGATGATTCGAAAATAGTGAAATCTCCGTACGAACTGTCTTTGAACTTTAGTTATGGACAACACGACAAAGCTTTAAGTTTGGCAATCATTGAAGCTATGGCAAGAAAGGGTTTGACAGTACGGCCACATTACTTTTATCCGATGATGGTTGATGCGATAAAGAATAATGATGGCAAAGGTGCCCTGGAAACACTTTCGTTTATAAGACAGAGAAATCTTCGACTGGATAACAATCTAATTTATTACGGAAAGAAAGCGTTAAAATGGGAGAATATGAGTCCACAAGACGTCGTCAGATCATTGCAAGATATCAGCGAGGACACGCTCTCGTATCAAAGTAAAGTGACAGCCTTGCATTTCTTTACTGACAGACTGGATCTTGACGAAATCAAAAAATTAATTGAGGCAAGTGGCGATGTTGTTGAAAACGAGGCATTTATTCCATGTCTTGAGTTACTTATTAAAAGAGATGACAGAACAGAAGACGCAGTCGAAGCAATTTTATTTGCTGAAAAGAAAGGTCTTGATGTTGAAAACTGTGTGTACATTCTGATAAACAGAATTTCGAGAACACGGAAAGCTTCTCGCAAACTCATTGATTTTATGGAAACTTTGTTTGAAAAGAATATAAATGCAGGCTCGAGAGTGTTCTCACGAATCTTGTCAGCGCTAAGTAAAGACGACACAACTGATGaattttttgagTTCTTACGTATTTTAAAACGAAATAACGTGGAACCAGATGCTAGCAGTTACCGTGAAATACTAAAGAAATCCTCAAATATGGGTAGAAAGGACGCAGCGGAATTCGCATTCAATAAAGTCAATGAAGTGTTTCCCGATGATCCAGTTGCATATTCCTATTTACTTTTGGCTTATGCTAAAAATAACGTTGGAAATCTTGGTTTCACCACCGATTTCAAGAATCGAACTAAGATCTGCGCGATATTTGACGAAATGGTGGAAAAGGGTCTTAAACCTTTCGATGCGGCAGTCTCACACGTTATCATAGCTCATTTAACCAAAGGAAACATTGAAATGGCCAACAAAATCAAGGAAAAATACGGCCCTGGAAGCAGAACATTCATAGTCTATGCTCAATACCTGAGGTTCTTTGCCAAGAAGGGAGATGTTCACAATTCAGAACGGATTATCTCTGAGATGAAAGAAATGGATAGTGGGATGTCGCCGTACACATACAACTTTCTTTTACAGGCTTATAGAAAACACGGAAATGTTGAGAAAATTAAGGAACTTCTTGATGAAATGAAAGCGAAGAACATTGAGAACATTTTCATGAACTACAGTGAGCTGATGATGGCTCAACTTAAATGGAGTGATATTGAAGGAGCATGGCAGGTGTATCAGAGTCAATGTCAATCACAGGATAGATTCCCGATTGATTCTTGTTGTGTTCATCTCATGAGGGAACTGGGCGTTAGACAAGACATCGCCAAGCTAGACGAACTTTCAAACGACATAACACTGTCTAAGTCGTTGTTGGAGCATGACAAAAACAGAATGAGACATGGCTTGGTGGTCGCATATTTAGACGCTGGCGCCGAAGACAAAGTTAAAGAAATTGTCGAGAAAGAAGACTTCAAACATGAGTACAGTGACTACAAAAGTGTTGCTAGAAATGCTGCTGGTTTAGGAAAGGTTGAATTACTTCGGAAACTAATGTCGTTTCTAGAGGAACAGAGTTTAAAACCAAGCGGCTTGTATGAACCTCTTCTTTATGCATACgGCAAGCAAAACGACATGACTGGAGCGTATGCTCTCAGAGATGAAATCATCGCTAAAGGTGAAACTCAAAGTTCTGTATTTATGAAACTGTTTGAAAGACTTGCAGAGAACTGGAAGAAAGAAGAGACAAGCGAACCTGAAAACTTTGACTTGACGGGCGCCGCTAATCTACGCATTCCTAAGAGCCGTCTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28C74	Leucine-rich PPR motif-containing protein, mitochondrial OS=Xenopus tropicalis OX=8364 GN=lrpprc PE=2 SV=1
Q6PB66	Leucine-rich PPR motif-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Lrpprc PE=1 SV=2
P42704	Leucine-rich PPR motif-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=LRPPRC PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004431 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01535 all species →	PPR	PPR repeat	Repeat	Interproscan
PF17177 all species →	PPR_long	Pentacotripeptide-repeat region of PRORP	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR033490 all species →	Family	Leucine-rich PPR motif-containing protein	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR033443 all species →	Domain	Pentacotripeptide-repeat region of PRORP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46669 all species →	LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0070129 all species →	Biological Process	regulation of mitochondrial translation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17964	LRPPRC; leucine-rich PPR motif-containing protein, mitochondrial	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.