Gene detail

Detailed information of ENSLDHP00000041405.1 in Eunicella cavolini

Genomic Location: chr5:2745308...2788052
NR annotation: CAB4024233.1, monocarboxylate transporter 10-like [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSLDHT00000045365

ATCGGTCAAGTGGAAGAGAAGGCAGCAGAAGAAGAAGATAAAGAAGCTAACGAAATCACAAAGCCTGATGGAGGCTGGGGTTGGTTCGTTTGCTTCGGAGCTTTCATTTGTAATTTTGTTGTCTTTGGTACACACAATTCGTTTGGAGTAATATACGGCACTTTGATTAAGGAGTTACGAATTAGCAGCGCTGAAACAGCTTGGATTGGTTCTATGGCAATGGGTCTCAATTTCTTCTTCGGTCCTATCGCGAGCGCATTGTGTGAACGCATTGGCTGCCGACTGACCGCACTGACCGGAGCAGTTCTTTCAGTATCTGGACTGCTATTATCATCATTCATTACACGTGAAGATGTGCCTAAGATGTACGCAACATACGGTGTAATGTGGGGTGTAGGATCTAGTATGTGTTATGTACCATCTATGGTTATATTGGGTCAGTATTTTGACAAACGTATGGCCTTGGCTAACGGTCTAGGTACATCGGGAAGTGGAATTGGGACACTGATTATGGCGCCTGTTATTCAAAAACTCTTGTCTACATTAGGTTGGCGGGCGACGTTCCGTTTTCTGGGTGGTTCTGCGTCATTGCTATTTATAGCTGTGTGGTTATTCCGCCCTCTGGCTGGTAGAAAGGCAAAGAATGAAGAGACAGCTCACCCGTGCGTTGATCTAAACATTTGGAGAAACAAATCTTTTATTGTTTGGGTCCTTGCTATTTCGTTTTTCctttttggttattttataCCATTTGTTCATTTGGTACGACTGGCAGGTCTTCATGGTGTCTCAGACAGCAAGGCAGCCTGGCTGATAGGATATCTCTCAATAGCCTCAACCGTTGGCAGAGTATTTTTCGGGAAAATTGGAGATATGAAACGAGTGAACAGACTCTTTATGTTTCAGTCATCTATACTAATAATTGGAGCCTCAACTGCCCTGTTGTCTTTAGCTAAAAGCTATGTTTATCTTGTATTGTATGCTATTACATTTGGATTCTTTGATGGTTGTTTTGTTGGTCAAGTGGCTGTGGTGACTTCGAGTATTGTAGGAATGAAACATCTGGGTGTTGCTTTGGGTTATCTGTTTGGTTCCATTGCTATACCGATGACACTTGGACCTCCTGTGGCAGGTTGGATATTTGACGCATGGCAGTCGTACAACGTAGCATTTTATGTAGCGGGCGGCATGAGTTTCGTCGGATTTCTTACGATGTTTCTCATACCACGATTAGTGAAAAAACATTCAGAAACCTGGGAAAAACAGTTCGACTTCAAACGACGAGCATCAATTGAAAGTCGTCGCAAACTCTTATCCGGTACCGATTCTGGGCAAGTAATGCCAGGAAACAGTTATGAAATTGAAGTTTTTTCAACTGAGAATAGCGGTGGTCCAGCAGTCACGCAAATTGCACTGGGCTGTCCAATTTCGAGAGTCGGTTTGACGACCCGCGGTGAACCCGCTAGCAACAACATGGCGGATGCGTTTCCGTCAATCGGGTCTCCCCAAAGGGTCGGAAACTCAAGAAGTAAAGTTTCCCTGAAGCCAGGACGAAGTTTAATGGACTGGATAAGATTAGGGAACAGCGGACAAGATTTACAAGGCTTTGGGGGCAAGTTTCATAAGGTTTCCATGGAGGAATTAGCCCAACATAATAGCATTGACGATGTCTGGATTTGTCTGAGAGGTTGTGTTTATAACATCACaccatatttggagtaccatcCTGGGGGTATACCTGAAATAATGAAGGGAGCTGGGATTGATGCAACACAGTTGTTCAACCAGATTCATCAATGGGTGAATGCAGAATCCATGTTAAAGAAATGTTTAATTGGTCCCCTTGTACAGACTCCaaaggaaaagaagaaaaatgATATTTGTGTTTCAGGAACAGGAAGTTACAAATCATCTATGTCTCTACTTGCCCCTCCAACTCCTGTTGTGAAAACAAAAGATGATGTGGATAACAGTcaagATGGTTTATTCTGGAAATGTGACGTGAAATCAATCGTGGAGGTCACTCATAAtgttaaaatgttttgtttcgCGTTACCCAATGGATTGGTAATGGATGCGGCCATTGGACACCATGTCCATTTACAGAGAACAATCTCAGGAATTGAAATCTCAAGACCATACACTATCGTAGTTCCGTCATTTGATTTCAAGAATACCGAGGAAAATAAAAGACACTTATATTTGATAGTAAAAATTTATCCATCGGGGACATTAACACCAAGTTTGTTGGATGTAAAAATCGGGGATCACTGCCTGTTGACTGGCTATAGTGGAAATTTTCAATCATCACGGCTAACGGAGGCAAAAGATATAATTATGATTGCTGGCGGGACAGGTTGGTTTATCTTTAAACTATTCAAGTTATTATTTGCTAATCGCGAAGAGAAGGATATTATCTGGAACGACAAATTAGACCAACTCCAAAAGGAAATACCCGAAAAATTTCAAGTTTACTACTTTCTGTCCAGTCCACCGGATCCATGGTCAGGCTACACGGGTCGAATCACAGAAGCTTCGCTGAAGGAATTACTACCACCTAGCCCGCAATCAGGCTGTGAGAAAGATTTACTGATATGTATCTGTGGTCCAGATGCTTTCATCTTACAGCAGCTAAAGTACGTTTATCGGTGCATGTGTCATTTAACTTTTTGTGTAATTGGGATTACATTCCTGGTGTATATCCTTACTtcattataa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28CZ9	Cytochrome b5 reductase 4 OS=Xenopus tropicalis OX=8364 GN=cyb5r4 PE=2 SV=1
A1L1W9	Monocarboxylate transporter 10 OS=Danio rerio OX=7955 GN=slc16a10 PE=2 SV=1
Q3U9N9	Monocarboxylate transporter 10 OS=Mus musculus OX=10090 GN=Slc16a10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000038 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF00970 all species →	FAD_binding_6	Oxidoreductase FAD-binding domain	Domain	Interproscan
PF00173 all species →	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan
PF00175 all species →	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018506 all species →	Binding_site	Cytochrome b5, heme-binding site	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR036400 all species →	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan
IPR001199 all species →	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR050327 all species →	Family	Proton-linked Monocarboxylate Transporter	Interproscan
IPR008333 all species →	Domain	Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain	Interproscan
IPR001433 all species →	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11360 all species →	MONOCARBOXYLATE TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0008028 all species →	Molecular Function	monocarboxylic acid transmembrane transporter activity	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSLDHP00000041405.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →