Gene detail

Detailed information of ENSLDHP00000041428.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: CAB4009536.1, WD repeat [Paramuricea clavata]
Species abbreviation ECAVO · all data for this species · gene families

Sequence

CDS

ENSLDHT00000045393

ATGTTCATGAAGCAGTTCATGGCTAGCTTTACTGGTTTCGATCAATCTATGGATACATCCGCAGCATTATCAGTCATTGCCGAGGCTCCGCCTTTTCATGGAGCCAGTGGTATAGCAAAGAGAATTAGGTCAGATGTTAGAAATGAGTTTGCACATTGCGACTTTTCCCACTGGACTGACGTAAATTACCAAGCAGCTTTAAAAGACATAGAGAGCTTAATAAAAAGTGTCAACCTGACACCAGTTGGGGAAAAGAAAACACTAGAGGATCTTGATGGCTGGGAACAAAAAGGCGTGGAGTTGTGTTTTGGACAGGCTATTGATAGTAAACTGCTAAATTTGATAACGCAAGATGTCGCTGAACTTCGTTCAtctgttgaaaaatggaaatttgaaaatgacGCCCAGAAGATTGAAGTGCTAGAGAAACTTGATCACATACATTCAAAACAGCTGTACAGAATTGAAGAACTCGAGAAGCTGCAAGCCAAGCACTCAAAGCAACTTGACCATCATTCGAAGCATCTTGACCATATCTCGAAGGAAGGTGAACATCAAGGGAAGAGACTTAGACGTCATTCAGAGGAATTGGCATCTCTAAACAAAAAGGTCACGACGGAAGATGAGGAAAAAGAAACTTACTCAGAGTTTTCGGATAAAAAAGttccGTATGGACTACGCAATCTTCCTCGTGACATGGTGGAACGACCATCAGAAGTGGACGAGATATTAAGGTTACTTACGGAGGGAAATAATAGAGTTGGTGTGGTGGGGAGTCGTAGCGGTGACGTCGTTGGTATCCGTGGTATGGGAGGCCTCGGTAAGACCGTCTTAGCCCTGGCTGTTGCTTGGGCTGCGTCTGAGTATCGTCAGATCATCTGGCTAGACATTGGTGAAACACCTGATTGCTTAGCACTGATTAACATTCTCATAAAAGTTTTGGGTGGAGCTGTATCGTTCAATGATCTTCGTGCGGCGCAAGCttgggtaaaagcaaacacaAGCGCCAAAGATTGTTTGGTAGTGCTTGATGATGTTTGGAGTGTTGACGACGTTGCTGTGTTTGATCACCTATCTGGAAAATGCCAGTTATTAATAACTACCAGAGATGTTGCAGTTGTTCGCGGCTCAAGAGGTTTTGTGTACGAACTACAAATTATGTCGGAGAATCAATCCCGAGCGCTGTTGTGCCAAAGTGCTGGGGTAACACCAGACGAACTGTCTACGTTGTGTCCTAAAATGCAGCAAATATTTAAAGAACTGTTAAGCCAGTGCCGAGGACTGCCACTGGCACTGTCGCTAGTGGGCTCAAATTTAATCGGCACTCGCTCGGAACAGACTTGGCAAGATATTTTAGATGGCTTTAAAAATGCCAAATTGGAAGAAATACACTCACAGTTTCCCACTGTCAAGTATCCCTACGATAACATCATAGCTGCCATCGATGTTAGCTTTAAACGCTTGAAGAAAAGTGAACAAGAGAAGTTCCTGGATTTTGCTATATTTCCCGAAGACACAAACATACCGTCAGATATACTCGAGCTGTTTTGGTCTTCAGAAGAAGCCGGGAGAACTTCGTGCAGCCCTTGGAAAGTAAGACGTATACTTGAAGCGCTTGAAAGGAAATCCTTGATTCAAAAAGGACCTGAACTGCAAGGGAAGACGAGTTACCGTGTCCATGATCTACTGTTGGATTTTGCCAGGACGAGACTTCGTGAAAGAGGCACACTTACTGATGTCCAGCGCTTGTTCGTGAAGATACTTCGTGGCCAGTGCGTGGACGGTGAATGGACTATCACCTCTAGTATCTACCAAAAAGACTATTACTTCAAGTACCTACCCTATCACCTCCATTCCTCGGAACAACATGATGAACAACTTGCACTGTTCTTTGACTTTCACTGGCTTGAACAAAAGCTGAAACAGACCAATTTACCCTCCATAATATCGGATTTTCGTTTCCTGACCACGCCCTTGGATGATGTGAAACTCCTTAAATCATCTTTAATGTTGTCTGCTGACATCGAGAAAAATCCGGATTCTATTGGTCCACAGCTGCTAGGAAGATTGGCCTCATATGCTGTCGAATACCCGAGGGTGAACAAACTGTTAGAGCACGTCCGTGAAATATGCGCGAAGACTCGCTATCTTTTACCGTTATTTTCCTGCCTCGAACTTGGAGGGCCAGAGATATCTAGAAAGTACTTTGAAAGTGAAGTATGGTCATTAGCGACATCCACTACTTCAGCTGGTACTATTGTCATTTGTGGTTTGAGAAACGGTTCGATCAACATCCATGAACTAGAAACAGGCAAACAAGTCCAAGATCTTAAAGGACATACAAGCATAGTGTGGTGTTTGGCTCTGTCGCACATTGGAACAATACTTGCATCAGGATCGTACGACAAAACTGCTAGAGTATGGAATATGGAAAGTTATGAACCACTTTTTGTGTTACAAGAAGAAAGTTCTGTGTATGGGTTGGATTTTAGTGCAGATGATGATCGTTTGTTTACCGGATTGAACGATGGGCGACTGAAAGTGTGGCGTGTGGCCGACGGTGAACTGTTGAATGACATTTATGCACATGATCAATATATTTGGGACCTGTGTACCACCAAAGATGGACAGTACATCGCTACTGCATCGAAAGACAAGACCATTAAGGTTTGGAAAGCTGATACATTAAATCTTGAAGCTACTTTGGTTGGCCATACTGGCCGCGTGAGCTGTGTAGTGGCAACAGATCCAGGAAATGACAATCCAATGCTTGTGTCTGGTTCATGGGATGGAACTTTAAAAATATGggatttaaaaacatatcaagAAATTCGTACCCTCAGTGCCTATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EPV5	Apoptotic protease-activating factor 1 OS=Rattus norvegicus OX=10116 GN=Apaf1 PE=1 SV=1
O88879	Apoptotic protease-activating factor 1 OS=Mus musculus OX=10090 GN=Apaf1 PE=1 SV=3
Q38834	Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=RPP13L4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006398 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17908 all species →	APAF1_C	APAF-1 helical domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00931 all species →	NB-ARC	NB-ARC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041452 all species →	Domain	APAF-1 helical domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR042197 all species →	Homologous_superfamily	Apoptotic protease-activating factors, helical domain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR002182 all species →	Domain	NB-ARC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19848 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0043531 all species →	Molecular Function	ADP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSLDHP00000041428.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.