Gene detail

Detailed information of ENSLDHP00000042970.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: CAB4015400.1, next to BRCA1 gene 1 -like [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Sequence

CDS

ENSLDHT00000047065

ATGTGTATAAACTGTGGTGCTATTCTCTACACTAGGAATTGTCCGAATTTCGACTTGTGCGAGGAATGCGAGAGTATTGAAGACATCCACGATCCTTCCCACGTCTTTGTCAAACTCCGCTATCCCGGTATTAGCATAGGCAGAAGACATAGTGTCATGATACCGCTTCTTAAAGACATCATTTACAAGAGCAAAGATGTTGAAATGGCAGAGAAGCAAGACAAACGAATGAAAGAAGTTCGCAGAAAATTGAAGCAATTGGCAAAGAAGAAAAGAGAAGAACAAATTGGAAAGAAAAAAGCTgacaagaaaatgaagaaactTCAAAAGGCTGGCAACAGTAACGAGAATCTTATTACTGGTTATGAACTGGCATTCCTTGGCGATGAAAGCTACCCTGATGGAACAGAAGTTACACCGGGATTTGAGTTCACAAAATGTTGGAAGATCAGAAACACTGGAGTTATTGCGTGGCACAACGACACGAAGTTGGTGTATCTGTATGGAAGAATGCGATGTATGTTGTCGACCGAGGTGGAACTACCTCATTTAGAACCTGGTCAGGAAGGAACAATCATGGTGACATTTGTTGCACCTCAAGATATTGGAGAGTATTACAGTGTGTGGCGTGCATCGtacaatgaaaaatattttggtagTAAGATGTGGTGTAAAATTAAAGTCGTACGAGAAGAAGTACAATCAGACGACGACGATGAAATCTTTCTGGATGCAGACGATACAACCATTGCTTCACCCATGCAGGAATCGATTCATGAATCTGCTTGCGAACCAGAGATATTCAGTCAAGAAAATTCACCAGCAACGGCAGAACCTGATCCCATTTTCCATGCCTATACAACACAACAAAACGAAGAAGATGAGAATGGTGCGGCAGGGTTGAACAGTTCGGAGAATCAAGCAGCAACCAGCGATGTTTCATTGCTTGAGTGTAATGAGTTGGAGTGGGATACGTGTTTAATAGATGATGACACACCCCTTATTGTTAATGAAGATGATGTGCCTGACATCGAGGTTATAAGCAATGCAAGTTCAGATGATTTCTGCGTCGTACCACTACCAGCATGTTTTGACCCAGACATTCCACTCAATGCTGACGATTTTGAACAAGGATCGTCTGTGGAGCCACCAGCGTCACTGGCACAAGAGATGGATCTCGAGGTCCCCTTGGGATCACCTGTGGATCAACAAGACACGGCAGCGTACGAGGAACAATCCGAGGAAGCCCTACCCACGAACGAACCAGCGCAAGATGAAACCGTGGATCCAGAGGACGAACCAGGATCATCCGAGGAGGATATGAGAGTTATCCCTATTATCCCAGAGCGTCCAGCAACACCGGAAGTTGACCATGCAGCGGAAGTTGACGATTCACGCGAAAGAGATCTACCAGAGGAAACGACATCATTGCCAATAAATATTGAAGTAAAAAGTACAGAGAGGAGCAAACTGCCGCCACTAAGAATGCCTGATTTTGATGCAAGATCTACAATAAGCGAACCCGTTGCCTCACAACCACCTTCCTTTGAACGCACCCCCGTCATTCCTGGGTGGTCACCAGCATCACCCCCCGGGAGAGCAGTACCCATTGTTCAAATCCGTGTCACTGAGCCCCATGGCTCAGGATCTGACTCGGTCCCAGGCTATTACGAAGTAGAAGTGAAGCGTGAAAACACTGAGCAAGGTCAGTGGCAAGCTGTTAGAACTCAACCACCTGATGTAGTTGTCGCTCGTCAAATCTCCGAGGACGAAACAGTGACAATCCAGCCACAAGGAACGACAACTTCACAGAACACGAATCAAAGTACAGCACAGTTTGCATCAACCTTCGTAGCAGGAACGCTAAAGCGAGCGTTCGGTACTGTCACTGAGACTGTCACCTCATTCATTAATGGAAACGATACTCCTGCTGTTGTTTATACGCCTAATGGAAGTAATGATAATGTCCATGTTGTGAGAGTCGTCCTACCAGAAGTAAATTCAACAACTGGTCCTGATGACATCAGACCTCTGATGAACCAACTTCACGAGATGGGTTTCTGTGATCGACAATTGAatgaaaaattgttgaaaaaacaTAACATGGACGTCAGTAAAGTTGTCACAGAATTACTTCATGAAAACGACAATGATTGGTCTTTTGTGCGTcattaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RC94	Next to BRCA1 gene 1 protein OS=Pongo abelii OX=9601 GN=NBR1 PE=2 SV=1
Q501R9	Next to BRCA1 gene 1 protein OS=Rattus norvegicus OX=10116 GN=Nbr1 PE=1 SV=1
P97432	Next to BRCA1 gene 1 protein OS=Mus musculus OX=10090 GN=Nbr1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005179 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16158 all species →	N_BRCA1_IG	Ig-like domain from next to BRCA1 gene	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR032350 all species →	Domain	Next to BRCA1, central domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20930 all species →	OVARIAN CARCINOMA ANTIGEN CA125-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0016236 all species →	Biological Process	macroautophagy	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17987	NBR1; next to BRCA1 gene 1 protein	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.