Gene detail

Detailed information of ENSLDHP00000042985.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: XP_028392942.1, next to BRCA1 gene 1 protein-like [Dendronephthya gigantea]
Species abbreviation ECAVO · all data for this species · gene families

Sequence

CDS

ENSLDHT00000047082

ATGTCAGAACGACAGCAAATTGCGATAAAAGCGAAGTGTAAGGGAGTTATTAGATTGCTCAAAACACCCAAAGACGTCTCATTCAAGGCTTTTCATGAGCTGTTGAAAAAcagttttggcattacaaattGTCAGTTGCAATACAGTGACGAAGAAGGAGATTCGGTTGAACTAGGATCTCAGGACGAGCTACAAGAAGCCTTAAAAGTTGGAGAGAACATTTCACCACTCAAGATCACCCTTATCTCACAGGAAAAGCCCACCATGAGTGCAATGATAAATAAGCCAAGAGATGCTGTACCATCAAATACAACCCAAGAAGAATTATCAGATGTCGACACAAACCCAGAGGACAACGCAGCCTCTGTAACCCGCAGTCCTTTGATTGAACCAATGTCAAGCTTGACAATCAATGAAAAGCCAACACCGAAGCCAAGACCAAAGCGCAAACGGATTGGATTCTACTCTTCGCTGTGTAGCGATATTGCCGATTTTGAAGTGGGCAAATCTTCATCCGCTACTGCTGAGGACACTCAGAGTGATGACAAGGCCAAGAAAGATCCAAAAGTGAAAAAGGAAGTTAAAAAGCCCAAGAAGGAAAAGCCTCTTCGTGGAAGCAAGTATTATACATCGTTAGCTGACGACATTGCAGCTATAAAGCTTCAGAAAGCTGATGAAAGTCAACAAGGGGGCAaagaaatgaaaagaaaaaGCCAGTCAAGAAAGAATGACGCACCTGCACGTGACCCGAGTAATGTTTCGCTCAGCGATGAAGAACCTCCAAAATGGTTTAATAAAGCTCTAGCTAAAATGAGTGAGTCAGTGTCTTCTCAAGTGCTTGGTGCAATAAATGATGCTGTGATGGTACCAACAGTAAATCCTACCAAACCAATGAAAAGAGATGGTGCTTCTTTTATTCACGAAGGCATTACATGCAATGGTTGTCAGCAAACCGTCGTTGGACCTCGTTATAAATGCGGGAATTGTCCGAATTTCGACTTGTGCGAGGAATGCGAGAGTATTGAAGACATCCACGATCCTTCCCACGTCTTTGTCAAACTCCGCTATCCCGGTATTAGCATAGGCAGAAGACATAGTGTCATGATACCGCTTCTTAAAGACATCATTTACAAGAGCAAAGATGTTGAAATGGCAGAGAAGCAAGACAAACGAATGAAAGAAGTTCGCAGAAAATTGAAGCAATTGGCAAAGAAGAAAAGAGAAGAACAAATTGGAAAGAAAAAAGCTgacaagaaaatgaagaaactTCAAAAGGCTGGAAGAAGCAACAGTAACGAGAATCTTATTACTGGTTATGAACTGGCATTCCTTGGCGATGAAAGCTACCCTGATGGAACAGAAGTTACACCGGGATTTGAGTTCACAAAATGTTGGAAGATCAGAAACACTGGAGTTATTGCGTGGCACAACGACACGAAGTTGGTGTATCTGTATGGAAGAATGCGATGTATGTTGTCGACCGAGGTGGAACTACCTCATTTAGAACCTGGTCAGGAAGGAACAATCATGGTGACATTTGTTGCACCTCAAGATATTGGAGAGTATTACAGTGTGTGGCGTGCATCGtacaatgaaaaatattttggtagTAAGATGTGGTGTAAAATTAAAGTCGTACGAGAAGAAGTACAATCAGACGACGACGATGAAATCTTTCTGGATGCAGACGATACAACCATTGCTTCACCCATGCAGGAATCGATTCATGAATCTGCTTGCGAACCAGAGATATTCAGTCAAGAAAATTCACCAGCAACGGCAGAACCTGATCCCATTTTCCATGCCTATACAACACAACAAAACGAAGAAGATGAGAATGGTGCGGCAGGGTTGAACAGTTCGGAGAATCAAGCAGCAACCAGCGATGTTTCATTGCTTGAGTGTAATGAGTTGGAGTGGGATACGTGTTTAATAGATGATGACACACCCCTTATTGTTAATGAAGATGATGTGCCTGACATCGAGGTTATAAGCAATGCAAGTTCAGATGATTTCTGCGTCGTACCACTACCAGCATGTTTTGACCCAGACATTCCACTCAATGCTGACGATTTTGAACAAGGATCGTCTGTGGAGCCACCAGCGTCACTGGCACAAGAGATGGATCTCGAGGTCCCCTTGGGATCACCTGTGGATCAACAAGACACGGCAGCGTACGAGGAACAATCCGTAAGTATCCACAGGCGTTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O08623	Sequestosome-1 OS=Rattus norvegicus OX=10116 GN=Sqstm1 PE=1 SV=1
Q5F3N9	Protein ILRUN OS=Gallus gallus OX=9031 GN=ILRUN PE=2 SV=1
Q24629	Protein ref(2)P OS=Drosophila simulans OX=7240 GN=ref(2)P PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005179 (this species only)
Ubiquitin family	ULD\|UFD\|PB1 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16158 all species →	N_BRCA1_IG	Ig-like domain from next to BRCA1 gene	Domain	Interproscan
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF00564 all species →	PB1	PB1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032350 all species →	Domain	Next to BRCA1, central domain	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR000270 all species →	Domain	PB1 domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20930 all species →	OVARIAN CARCINOMA ANTIGEN CA125-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0016236 all species →	Biological Process	macroautophagy	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSLDHP00000042985.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.