Gene detail

Detailed information of ENSLDHP00000043619.1 in Eunicella cavolini

Genomic Location: chr8:1225896...1233874
NR annotation: CAB3981048.1, Leucine-rich repeat and WD repeat-containing 1 [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSLDHT00000047796

AAAATACACACAACCATACTTACTTTGAACATCGCGcgaaaattcaatatggcggaagaAATACGTTTAAAAGACGAAGTGGTTGAAGATGAAGTTCCTGTCTTTACAAACGATTCTGGCTGTCAATTGTGTCTTAAAAAGCTTTCTAAATACACTTGCCCTCGATGCAACGTGAAGTATTGTTCTGTGGATTGTTACAGAAGCAGAAAGCATGTCCAATGTTCTGAGACGTTTTACAAGCAGTGCGTTATGGAGACTTTACAAGGAGACACTATTGACAACCATGAAAAACGTAAaatgatggaaatattaaaacGCTTTGAGCAAGAAGAAACAGAAGGGGGTTTAGGGGAGGAAGGGTCAGAACTTGGAGAAAATTTGGAGGAACGATTGGAAGGACTGAATTTAGACCGAGATACTGAAAAAATTTGGGAAAAGTTAACACAGGAAGAAAGGAAAGAATTTCAGAGGGCTGTAGATGATGGATATATTGGGTCACTTGTTGATACATGGGTACCTTGGTGGATTTCTAAGGATACCAGATATTTGTTGATAGGGGTAACGTCTGGTAATTGTATGTTACCCAAGCTGCTAAAGAATGTCCCACAGTTATCATCTCTAATCAAATCAAAGCCACCAAGCGATCAAATGAAATATAACCTAGTAAACATACTGTATAGCTATGTTTATATCTGTAGATATTACAATGGTTGTCATCGTGATTTCTTGCAAGAAGCTGTGGACAGACTATGGAAACTCTCGGCAGTGTTGTTCCATTCTGTGAATTTCTCTTGCCTTGATGCTGCACTTCGGAGTGTAATTGAAGCAAGTCAACAACACAAAGAACTATTTAACTCCGAGGAGTTCTCTCTATCAATAATTGACGATGTTTTGTCACTTTTGACAGGCAGTGAGATAGATCGAGAAACTTGTTATGTACAGTTAGCTCTATCTGATATTCACAGATTACTTGCCAAAACTATTAAACTTAGCAAGAATGACAACAAAACAAATGTGATGATTGAAGAAAATATAGAATCTAAAGACCATACAAAGTCACTGTGGTTGGCAAAGAAAAAAATACTGTTCATGTTGGCTTGGTTTTGTGAAAATCAAGACGAATGTTTAACGTTGGTCCCTTTCCTTCCTGTGGTGAAAGAAGCCATGGCTTTAGAGCAGCGGTCTTCCAATTTTCTTTCTGGGTTGAACTTGGTGTCTGTAAATGCTGAAGTTTTGAAACGATTGGTAAATCTACAGACCCTGGATGTGTCCAACAACAAACTGTCAGGGTTGAAGTCGGAGGGATTTACTTTGAACTCTTTGAAAGAATTGAATTGTTCATCTAATAATCTGCTTACTGTTGatgattttgttttatttccaAATTTGGAGAAAGCTGATGTGTCAAACAATGTGTCACTCGAGGTTGCTGATCGTTACAAGTTGGTGTCCCTCTTGCCAAAACTCAAAGTATTAGAGGATAAGGAGGTTTCAGTAATGCGTGAAGCTGTCGAAAAGTTTGATGGAATTTTGGCAGCCAAGGTATATTCTCACCAGTATTTAATGGAGGAGGATACTGATGTAATCATTGGCCCTGCTGCCCttaaaaaatatagagaatttAAGGTGAGTGTTAAAATATGTaGGACTGGAGTAAATTTTGCTCAATCAGAGTATGTGCTTTCTCAACTGCTACAAACACACTCGCTGAACAATGACCCAACTGACAGACGTACACAAGTTTGGGCTTGTGAATTTCAACCAGATCCTTTAAATCCGGACAAAACGACAACCCTTTGTGCGACGTGTGGCGGTGATGCAGTATGTTTTATCGAGTGCAAAACGGGAGAAGTTGCAAAAAAATACAAGCAACCAGGAGATGTGTTCTACTGTCTAGCGTGGACCGTATTTCCTGTAAAAGAAGCTTCGGGTGTCGAATATAGAACTGCTCTAGCTGTTGGTGGCAAGCAGTGTGATATCAGAATTATACAACCAGAAGATCTTGTGTGTTATGATAGCGTAAACGCACATGAAGGTGCTATAGAGAGCCTGCATTTTCATCCGACAGAACCAACATGGCTGTTTAGTGCTGGTGATGATAATCAAATAGTCTTGTGTGAACTTGGTCTGTCCACATCAGCAAAAACAAACCCTAAAACTACaattttaatgaaattaaagACACAAGGTATTCTGCGTTCACTCACCATACCACGGCATGGTGAAGTTTTGGTCGGAGGAGGAGACAAAGGCTGTACGGTGTGGTCCATTGTGGCGTGTGCTAATAAGAAAAGTGAGCTTCCATTATATGAACTAAATTTCCCAGGAAAGAGAAAAGTCCCTTTAGACTGCGTCAAATGTTTAAGTGATCATGTTATAGGTATGTGTATAAAGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UFC0	Leucine-rich repeat and WD repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=LRWD1 PE=1 SV=2
Q8BUI3	Leucine-rich repeat and WD repeat-containing protein 1 OS=Mus musculus OX=10090 GN=LRWD1 PE=2 SV=1
Q2TBW5	Zinc finger HIT domain-containing protein 2 OS=Bos taurus OX=9913 GN=ZNHIT2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005297 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12799 all species →	LRR_4	Leucine Rich repeats (2 copies)	Repeat	Interproscan
PF04438 all species →	zf-HIT	HIT zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025875 all species →	Repeat	Leucine rich repeat 4	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR007529 all species →	Domain	Zinc finger, HIT-type	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR052489 all species →	Family	Leucine-rich repeat and WD repeat-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24370 all species →	OPTICIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSLDHP00000043619.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.