Detailed information of ENSLDHP00000044046.1 in Eunicella cavolini

Genomic Location: chr8:16913904...16924144
NR annotation: CAB3995467.1, Phthiocerol synthesis polyketide synthase type I, partial [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7TVK8Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=pks2 PE=3 SV=1
A1KQG0Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) OX=410289 GN=pks2 PE=3 SV=1
A5U9F4Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) OX=419947 GN=pks2 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000672 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02801
all species →
Ketoacyl-synt_CBeta-ketoacyl synthase, C-terminal domainDomainInterproscan
PF00698
all species →
Acyl_transf_1Acyl transferase domainDomainInterproscan
PF14765
all species →
PS-DHPolyketide synthase dehydratase N-terminal domainDomainInterproscan
PF00109
all species →
ketoacyl-syntBeta-ketoacyl synthase, N-terminal domainDomainInterproscan
PF21089
all species →
PKS_DH_NPolyketide synthase dehydratase domainDomainInterproscan
PF16197
all species →
KAsynt_C_assocKetoacyl-synthetase C-terminal extensionFamilyInterproscan
PF08659
all species →
KRKR domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR049900
all species →
DomainPolyketide/metazoan fatty acid synthase, dehydratase domainInterproscan
IPR020807
all species →
DomainPolyketide synthase, dehydratase domainInterproscan
IPR014031
all species →
DomainBeta-ketoacyl synthase, C-terminalInterproscan
IPR014043
all species →
DomainAcyl transferaseInterproscan
IPR050091
all species →
FamilyPolyketide and Nonribosomal Peptide Biosynthesis EnzymesInterproscan
IPR016035
all species →
Homologous_superfamilyAcyl transferase/acyl hydrolase/lysophospholipaseInterproscan
IPR016036
all species →
Homologous_superfamilyMalonyl-CoA ACP transacylase, ACP-bindingInterproscan
IPR020841
all species →
DomainPolyketide synthase, beta-ketoacyl synthase domainInterproscan
IPR016039
all species →
Homologous_superfamilyThiolase-likeInterproscan
IPR036736
all species →
Homologous_superfamilyACP-like superfamilyInterproscan
IPR018201
all species →
Active_siteBeta-ketoacyl synthase, active siteInterproscan
IPR049551
all species →
DomainPolyketide synthase, dehydratase domain, C-terminalInterproscan
IPR014030
all species →
DomainBeta-ketoacyl synthase, N-terminalInterproscan
IPR036291
all species →
Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR049552
all species →
DomainPolyketide synthase, dehydratase domain, N-terminalInterproscan
IPR032821
all species →
DomainPolyketide synthase, C-terminal extensionInterproscan
IPR001227
all species →
Homologous_superfamilyAcyl transferase domain superfamilyInterproscan
IPR042104
all species →
Homologous_superfamilyPolyketide synthase, dehydratase domain superfamilyInterproscan
IPR013968
all species →
DomainPolyketide synthase, ketoreductase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43775
all species →
FATTY ACID SYNTHASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004312
all species →
Molecular Functionfatty acid synthase activityInterproscan
GO:0006633
all species →
Biological Processfatty acid biosynthetic processInterproscan
GO:0016746
all species →
Molecular Functionacyltransferase activityInterproscan
GO:0004315
all species →
Molecular Function3-oxoacyl-[acyl-carrier-protein] synthase activityInterproscan
GO:0016740
all species →
Molecular Functiontransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSLDHP00000044046.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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