Genomic Location: not available for this species
NR annotation: CAB4007239.1, FACT complex subunit SSRP1-like, partial [Paramuricea clavata]
Species abbreviation ECAVO · all data for this species · gene families
| CDS |
| ENSLDHT00000049477 |
| Protein |
| ENSLDHP00000045078.1 |
| UniProt accession | Description |
|---|---|
| Q04678 | FACT complex subunit SSRP1 OS=Gallus gallus OX=9031 GN=SSRP1 PE=2 SV=2 |
| Q08943 | FACT complex subunit SSRP1 OS=Mus musculus OX=10090 GN=Ssrp1 PE=1 SV=2 |
| Q9W602 | FACT complex subunit SSRP1 OS=Xenopus laevis OX=8355 GN=ssrp1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005729 (this species only) |
| Transcription factor family | HMG · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00505 all species → | HMG_box | HMG (high mobility group) box | Domain | Interproscan |
| PF03531 all species → | SSrecog | Structure-specific recognition protein (SSRP1) | Domain | Interproscan |
| PF04258 all species → | Peptidase_A22B | Signal peptide peptidase | Family | Interproscan |
| PF21103 all species → | PH1_SSRP1-like | SSRP1 PH domain | Domain | Interproscan |
| PF08512 all species → | Rttp106-like_middle | Histone chaperone Rttp106-like, middle domain | Domain | Interproscan |
| PF17292 all species → | POB3_N | POB3-like N-terminal PH domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009071 all species → | Domain | High mobility group box domain | Interproscan |
| IPR013719 all species → | Domain | Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain | Interproscan |
| IPR024954 all species → | Domain | SSRP1, dimerization domain | Interproscan |
| IPR000969 all species → | Family | FACT complex subunit SSRP1/POB3 | Interproscan |
| IPR038167 all species → | Homologous_superfamily | SSRP1 domain superfamily | Interproscan |
| IPR036910 all species → | Homologous_superfamily | High mobility group box domain superfamily | Interproscan |
| IPR006639 all species → | Family | Presenilin/signal peptide peptidase | Interproscan |
| IPR007369 all species → | Family | Peptidase A22B, signal peptide peptidase | Interproscan |
| IPR048993 all species → | Domain | FACT complex subunit SSRP1-like, first PH domain | Interproscan |
| IPR050454 all species → | Family | RTT106/SSRP1 Histone Chaperone/FACT Complex | Interproscan |
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR035417 all species → | Domain | FACT complex subunit SSRP1/POB3, N-terminal PH domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45849 all species → | FACT COMPLEX SUBUNIT SSRP1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0042500 all species → | Molecular Function | aspartic endopeptidase activity, intramembrane cleaving | Interproscan |
| GO:0031491 all species → | Molecular Function | nucleosome binding | Interproscan |
| GO:0035101 all species → | Cellular Component | FACT complex | Interproscan |
| GO:0042393 all species → | Molecular Function | histone binding | Interproscan |
| GO:1902275 all species → | Biological Process | regulation of chromatin organization | Interproscan |
ENSLDHP00000045078.1.
