Detailed information of ENSLDHP00000045150.1 in Eunicella cavolini

Genomic Location: chr8:121607...124455
NR annotation: XP_028400677.1, septin-1-like [Dendronephthya gigantea]
Species Eunicella cavolini · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5ZMH1Septin-2 OS=Gallus gallus OX=9031 GN=SEPTIN2 PE=2 SV=1
P42207Septin-1 OS=Drosophila melanogaster OX=7227 GN=Septin1 PE=1 SV=1
Q5BKN4Septin-2A OS=Xenopus tropicalis OX=8364 GN=sept2-A PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000517 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00735
all species →
SeptinSeptinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR030379
all species →
DomainSeptin-type guanine nucleotide-binding (G) domainInterproscan
IPR016491
all species →
FamilySeptinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18884
all species →
SEPTINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003924
all species →
Molecular FunctionGTPase activityInterproscan
GO:0005940
all species →
Cellular Componentseptin ringInterproscan
GO:0008021
all species →
Cellular Componentsynaptic vesicleInterproscan
GO:0015630
all species →
Cellular Componentmicrotubule cytoskeletonInterproscan
GO:0017157
all species →
Biological Processregulation of exocytosisInterproscan
GO:0031105
all species →
Cellular Componentseptin complexInterproscan
GO:0032153
all species →
Cellular Componentcell division siteInterproscan
GO:0034613
all species →
Biological Processprotein localizationInterproscan
GO:0060090
all species →
Molecular Functionmolecular adaptor activityInterproscan
GO:0061640
all species →
Biological Processcytoskeleton-dependent cytokinesisInterproscan
GO:0005525
all species →
Molecular FunctionGTP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16942SEPT2; septin 2-Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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