Genomic Location: chr7:18482982...18485659
NR annotation: CAB4013254.1, Uracil-DNA glycosylase [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families
| CDS |
| ENSLDHT00000049857 |
| Protein |
| ENSLDHP00000045416.1 |
| UniProt accession | Description |
|---|---|
| P13051 | Uracil-DNA glycosylase OS=Homo sapiens OX=9606 GN=UNG PE=1 SV=2 |
| P97931 | Uracil-DNA glycosylase OS=Mus musculus OX=10090 GN=Ung PE=1 SV=3 |
| Q5L9D9 | Uracil-DNA glycosylase 2 OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2) OX=272559 GN=ung2 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001188 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03167 all species → | UDG | Uracil DNA glycosylase superfamily | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018085 all species → | Active_site | Uracil-DNA glycosylase, active site | Interproscan |
| IPR002043 all species → | Family | Uracil-DNA glycosylase family 1 | Interproscan |
| IPR036895 all species → | Homologous_superfamily | Uracil-DNA glycosylase-like domain superfamily | Interproscan |
| IPR005122 all species → | Domain | Uracil-DNA glycosylase-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11264 all species → | URACIL-DNA GLYCOSYLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0016799 all species → | Molecular Function | hydrolase activity, hydrolyzing N-glycosyl compounds | Interproscan |
| GO:0004844 all species → | Molecular Function | uracil DNA N-glycosylase activity | Interproscan |
| GO:0006284 all species → | Biological Process | base-excision repair | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0097510 all species → | Biological Process | base-excision repair, AP site formation via deaminated base removal | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03648 | UNG, UDG; uracil-DNA glycosylase | EC:3.2.2.27 | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
