Detailed information of ENSLDHP00000045462.1 in Eunicella cavolini

Genomic Location: chr7:4947492...4949510
NR annotation: CAB3981815.1, Hypothetical predicted protein [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8CJ67Double-stranded RNA-binding protein Staufen homolog 2 OS=Mus musculus OX=10090 GN=Stau2 PE=1 SV=1
Q7ZW47Double-stranded RNA-binding protein Staufen homolog 2 OS=Danio rerio OX=7955 GN=stau2 PE=2 SV=2
Q68SB1Double-stranded RNA-binding protein Staufen homolog 2 OS=Rattus norvegicus OX=10116 GN=Stau2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002781 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00035
all species →		dsrmDouble-stranded RNA binding motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014720
all species →		DomainDouble-stranded RNA-binding domainInterproscan
IPR051740
all species →		FamilyDouble-stranded RNA-binding domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46054
all species →		MATERNAL EFFECT PROTEIN STAUFENInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003725
all species →		Molecular Functiondouble-stranded RNA bindingInterproscan
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0007281
all species →		Biological Processgerm cell developmentInterproscan
GO:0008298
all species →		Biological Processintracellular mRNA localizationInterproscan
GO:0010494
all species →		Cellular Componentcytoplasmic stress granuleInterproscan
GO:0035418
all species →		Biological Processprotein localization to synapseInterproscan
GO:0043005
all species →		Cellular Componentneuron projectionInterproscan
GO:0043025
all species →		Cellular Componentneuronal cell bodyInterproscan
GO:0098964
all species →		Biological Processanterograde dendritic transport of messenger ribonucleoprotein complexInterproscan
GO:1990124
all species →		Cellular Componentobsolete messenger ribonucleoprotein complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSLDHP00000045462.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP