Gene detail

Detailed information of ENSLDHP00000045744.1 in Eunicella cavolini

Genomic Location: chr7:14933494...14946133
NR annotation: CAB3976810.1, Hsp70-Hsp90 organizing 3 [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSLDHT00000050238

ATGGTTATGACCAAATCTGAAGCGCTGAAAATTCTCGAACTAGGTCAAGGTTCTACACCAGAGGAAGTTCGTTCCAGTTACAAAAAACTGGCATTGAAATGGCACCCTGATAAACATAACAATAGTACAGAATCAACACAGAAGTTTCAAGAAATCTCAGAAGCTTACAAAAGGTTGACAAGTAAAGAAGATGATGATGACGTTAGGATTTCAATGGCTGATATGTTTGACTTGTTTGCCCACATTTTCTTCAGTACCAGTGGCTATTTTGTCAATGATCATCTGTTTTattctgatgatgatgatgatgacgacgacgatgatgatgattaCATGTATATGAATGCATCAGATTCGTCAGATGAAGATGTTCCTGTATATAGAAGTAGACAACATCATGCGAAATATTCAGATTTGATGGCAAGCAGAGTCAGCCGAGCTGCTGCCACTGCATACAGAAATGAGTTGCGCAAAAAGAAAACACAAGTCAAAACTGGGATATCAGAAGAACAAGCGAGGAAAAATGCTGACGAACTAATAAAAgaagaggaaaaattaaaaaagaaagcGGAAAAAAGAAGGGCTAGAAAAAAAAGAAATCGAGCTAACAGAAAACAACgagaaaaagaacaaaaagcaGATGACCAGGAGGAAGAAAATGACGAAGCGTCAGAAGAAATGGAGATGCACAATAGACAAAGAAGAGATAGCtcgaaagaaaacaaaaatccGACAAATAAGGAACACAGTACAAGAGAAAAtagcaacaaaaataaaaaatccacTTTAGAGAAATCTGGAGATGACGAGGATTCCGAAAATGAACGCGTACATGATGAAACGTGGGATACATCAAGTGCGTTCTTCAATCACGCCGCGCGACGCGGTCCTGTACATACAACCAATCATAACACAAGTCACGAAACAACGTCTGCGACATCTGCGGACACATCTGTAAATAGACATGAACATAACACACAGACTAACCGAGGAGATCAACAGAGAACAGAGGAGTTAGAAAAAGACCACGTTATAGAACAAAGTAGACATTTAGCAGCAATTGGAAATAACGAGGCAAATGAAGGGAACTATGGAGCGGCAATCGAATATTTCACCCAAGCCATTTCATTACATAACCGCGACTTCAGatTCTTCGGAAATCGCTCATATTGTTACGACCGCTTGGGAGAATACTCGAAAGCGCTTCAAGATTCAGAAATTACCATAATGCTCGTCCCACACTGGGCGAAAGGCTATTTCCGCAAAGGTCGTGCTTTGGCTGGGCTCACGCAATACGCGGATGCCGAAAAGGCATTCCTACAAGTACTGAAACTCGACAAGCATTGCGAAGACGCGAAATTTGAATTAACAAGAGTTCGTGTGCAGCAGTTGAAGGATATGGGTTTTGGACATGGTCAAAGTGAACGCGCTGTGCGGCTTTATGGAACAGTACATGCTGCTCTGGACGCACTATTGTCAGGCAAAGTAAAAAATCTTGTTGCTAATGAAGATGAGATGTATGTGTCAGATGGCGAGGTGGACGAGCAAGATAATGACCCAAGGCAAAGATATTCGGATCCATTGGCTTCACTTTGGGTGGGAAACGTCGATTCAAAACAAGTCACAGAAaggcaactcactcatctattTTCAAAATACGGTACTATAACATTAATTCGAATTCTACCTCAAAGTTTTTGTGCATTTGTAAATTATGAGAATAAAGATAGTGCTGCCAGAGCTATGCAATCTCTGCAGggTTACATGATTGGCGGGCAAAATATAAGAATACGTTATCAAGGTAGTGACAAAACTTCTAAAAACACGGACAAAACGACGAAAGCTACGGGACCTGTGAATGGAAACGAGTGTTACTTCTGGCGTACAACTGGCTGCGCGTACGGCGATAAATGTCACTACACGCACATACCAAGCAATAAAGGCATTGACATTAACAAGGTCGAACAAAAATATGGTAAAATAAAAACGGGAAAGAAAAGTAGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P25407	Hsp70-Hsp90 organising protein (Fragment) OS=Plasmodium falciparum OX=5833 GN=HOP PE=3 SV=1
Q8ILC1	Hsp70-Hsp90 organising protein OS=Plasmodium falciparum (isolate 3D7) OX=36329 GN=HOP PE=1 SV=1
Q9USI5	Heat shock protein sti1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sti1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006237 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47678 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 31	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSLDHP00000045744.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →