Gene detail

Detailed information of ENSLDHP00000046801.1 in Eunicella cavolini

Genomic Location: :...
NR annotation: CAB3991144.1, basic proline-rich -like isoform X3 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSLDHT00000051360

ATGGCTAAACATGTACTGAGTAAGTATATCATCACGAAGAAAATTGATCGATTAACAAGAAAACTGTTTGTGACGAGTGAGTACGAAAGTGAAAAGTTTTCGCAACTTATTCGAAGTATGAAAACCGCAAATCGTGATACTGCGCGAGATACATTGAAGGAGCTGGTGGAAGTCTTTGACGAGAAAGATAGACATTCTTCTATCCGAGCTCATTTACGAGCCCATTTAGCAAAGTATCACATGATAGAATACAAAGATTTCGCCGAAGCGAAGGAACTAATCGAGGCTGCTATTCGCGAACAAGACAAAGACCCTCTTCTACATCATATTCATGGCGATATAATTCGTCTTCATATATTGGTTCTTGTAGAGAAAATGAAAAAGAAATCGAAAGAGGATATGGAAACAATTTTATCTTTTGCAGACCAAAGCAGTAAATGTTTCGAATTTGTACGATCTAAAAGGCCAAATATGAGCCATGGATATATATCTGATGCAATGGTGCGAATTGCTGTTATGCAAGCGGGCATTAAACTGGTGGGAGGTAAAAATACCAGCTTCATCGACTATCTAATTGAAAGAATCGATGAAATTAAGGAACTCGATGATGAGGATATTTCACCAAATTCACGATACCTCTTGTCTCTGCTTTCTGATACGCATGATTATCTTGATGAGAGATGCAATGACTTCGAGCAGAAAGAAAAATGGAAGGAAACCTTCCTAATCTGCATTGGCGACTTAAAAAATCTTACACGGTTGTGCGATAAAATTAAACAAGAAAAAAACTGCAGGTCGTTCGTTAGTTGTTCTGGTTGGCTGCATGAAATACTTGTGCAAACCCAAATTTTGCATCACGCCCTGGAAATTGAAAACAAGGTTTTAAGCCCTCAAGAGATTGaagtaaaattgaaaaaaatggaaGAATATGGTCTGCATTCCAAATTTGGAGATCGTTTCATGAAATTCTGGATTCGATATTCACGTCAGCGATTGTCTGTGCCAAATTTGCAGGAAGTACAGAAGAGAGTAAACGAGTGGTCCAACAAGATGAAGAAAAAACGAGTAGCATCTCCTCAAGCAGAATTTTATAATTTTGTCGTGCACGTTTTAATGGCATTGAAAGATCCGTCCGATCGAGAGAAGATGAATAGAGCAGAGAAGTTAACAAAACATCAACAATCTAAAAAGTACAGCAGGAAAGAAGATTTTGTTCTTCCCCTTGAATGGCTGCATCCGAAAGACGGCCGTCATATTGAGTCAATTGATTGCCTACTCCACCACGATGACCTTATCAAAGGTACAAGTAGGTCTTCGAAGTCTGACAGAAGGAAGCCTATTGAAGGTTCCCTTTTTGAAAAGAATATTACCCAATGGGAAGGAACTATTACAGCTGTTCGCAGTGATTGGCAGGGTACTATTACATTTAAAAAGCGCCTGCCGGTTCGGTTTGTACCATTAAATGCACAACCGTCAATGCCATCATCGGGCGATACGGTAAAGTTCTGCTTGTCGTTTGATGGTTTTGGTCTCAGTGCTTGGCGAGTGATGCGTGAAGCAGGAGCAAAATCCAGTGATCTTTCCGACATTGTTAGCAGAGATGATGATTCTGATAGTGAGCAAGAAGATGAGCAAGAAGAAGGCTTTGAGGTTGCCCCATCACTTCGTTCTATCGATTTCCAAGAGCCGGATGAAAAACAGGGCTTGGATGAGCATAAAGATCAAGTGCGGCAAGATAGACCAGTCTCAAAAAAACGCATTAAAACGCCCTGGGATGAATACAATGAACAACGGATGCAAGGTGTAGTTACCTTTACCAATCCTGAAATGGGTTTTGGGTTCATAGAAAACGCAGACATTGGGGATAAACTTTTTTTTCACGCTTCACAACTAAGGGTACCAGTAAAAAACCTCGAAGGAAATATTGTTAAGGACATGCTGTTGGATTTCAAGGTTGAAATGTTGACTGAGCGAACTCGTGCTGCCGATATTCGTGTGTTGAAGGACAAAAACCTTCAAGAAGCCATGCTGGAAAAACTTCGAAAGAAAAAGCCTAAAATTTCGCCAAGCGTGCACAATAATCACCATGGAAACGAATATGGCACGAGACGTCAAGAGGGCTCCGTCATAAGGTTTGATGGCGCTCAAGGATACGGCTTCATCAAGCCAGACAATGACAGATCTGGCAACGATCTCTTCTTTAGTCGCAAAAATCTTACGTCAAGAGGACAGCTTCCTAAAGTCCGTGACCGCGTGGAGTTCTGTGTGAGAAAAGCCTTTGACGGTCGTCCCGAAGCAACAGACATACTAGTACAGAACAAATCCATATCAAGTAACAGATGGGATAGTTTTATCGGCGCTGGTATACAAGAAGGTTTCGTGAACAGCACAACAGATGATGGTGGAACAATAAACAACTCCAAAGTGACAGGAACGAGAAGAAATCTATTTTTTAGCAACAGAGACATTCTTAACAAGCCAAAAACAATTGTTGAGGGAACTAAAGTGCATTTCGAAGTTATTAGAAGAGGAGGGAAATGTGTTGCTGTTAAGATTAACGTGATCGATTCTCCAGAGGAAATGACGCAGACTGAAAGCGGTGAAGCAAGCTTTCCTTCCAACGACTTTTAA

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24044	RGPD; RANBP2-like and GRIP domain-containing protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala