Gene detail

Detailed information of ENSLDHP00000047141.1 in Eunicella cavolini

Genomic Location: :...
NR annotation: XP_028393956.1, ubiquitin carboxyl-terminal hydrolase 48-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSLDHT00000051700

ATGTCAGATTCAAGTCCAAAGACACTGGACATTTTGTCAGATGCGTCACTAACCGATGTTTTAAGGCCCGCTAAAAGGCCTATCTACGCAATACGATTTGTCTCGTATACGATTCTGatcgtatgtgatcgaataaacacgcgtacaaatgttaTGTTCCAAATTTCGCCAGTGAAGAACGAGCAAAAAATGTGGgatcagcactcgttgtcatacgtcagaatgacaAAAATATGTTTTTCTTCCAAACATAGAAAGAATTGTAAATTTAACCCAAACTGTCTGGGATCGTTTGTTGGTTTAAAGAATTTAGGTGCAACATGTTATGTTAACACATTAGTGCAGCTTTCAATGCTTTTCCAGGCCTCAAATTTAACGTACAGTAGTCCTTGGGCCATTAATTCTCTTTTAAAATCTGACATATTATTTGACTTAAATAGGTTTGTGGATCCAGCGCCGTTTGTTGAATCTCTGGGTCTAGATACAGAGCAACAACAGGACGCGCAAGAGTTCTCTAAATTATTTATGTCTCTACTAGAAGATACGCTTTCCCAACAACCTAACCCCGTGATTAAAAACATCGTCCAGCAACAATTTGGAGGATCGTACGTTTACATTACAAGGTGTAGCAAGTGCGGAAAGCAGTCACAGAGAAGCTCCACGTTTTATGAACTTGATTTGAATATTCAAGGAAACACGACTTTATCCCAATGTATCAAGGAATTTCTAAAGGTATGGAACGTATATGTCAATCACGTCCATAGCAACGAGGTAGCAACGAGTAAAAATTCACTATTTAGTTTTAGTAAGTATTTTCCAGTGTTGTTCATGTTTTTGGCATACAAGGTCCTATATAACAGCTACTTTATAGTTTCTGAATTTCCAATATCAGCAGTGGTAAACAACGCACCTTTTGGTAGTTGTGTCTACGACCTTACCGCTGTGTTGATTCATCGTGGTCTCAGCGCCTATTCTGGCCATTATGTCGCCCATATCAAAGACAAAaagAGCGGTGTCTGGTATCGTTTTAACGACGAAACGACAGAGAAAATGAAAGGGAAGTCGTTGAATTTGGAGTCAGAAGAAGATTTACACGGTAGGTTCTTTCAACTTCGAATCTATATTACGGGCGATGAAAGTTATGATTGGATAGCAACAGATTGGTTACGGAACTGGCTGTCTGTTGAACGCAAAGAACCATGTCCCATCGACAACTCTTCGTTGGTTTGCCAACATGGAAAGTTACATCCAGACAAAGTACTGTGTGCTAAAAGAATATCAACAAAAGCATCGTCTTTTCTTTATAAACGATATGGAGGTTCTCCTAGATTAGAAAGCGATTCGTTTTGTTTGGACTGTGTGAAAGCGAGATGTCGAAGTCTACAGTTCTCGTCACATTTAGCCGAAGATCAAAAGTTCTTTATGAAAGCTCTGAAAAATGTACATTCTGCAAACGTTTTTTATCTTTTCAGGACTGGTTTTTGGGTGAGCAAGAAATCGTTGCAAAAATGGAAAGTTTTAGCTCAAAACGTTCAGGAACAACTAACTGACGAATCGGCGAAGATAACGACGAACAACTCCGACACTCCAGACGATACAAAACTGACGAGAGGAGATGAGAGTCCTGGGCTGGTAGATATGGATACGGATGGTAAAAGAAGGATATCTGGTTCGGAAGGGGGATCAGTAGGGATAGATGATAAagagaaattaaaatttaaCGAAGATTTGCTTTGTGAACACGGTTGTTTGTCGACCTCGACAGTCACAAGAAGACTTGTAACGGACGAAGTTTGGAAACGACTTCGCTTTTATTTCCCTGAAGCTCCTGAATTTTCTTGGCGTGAAACAGCTTGCCCAGTTTGTACTGTACGAGATATTGAGGAAGCGAAAAGAATTGAAGACCTAAAGGAATTAGCTTCACAGCAAAAATCTATTTTAGGTACTTTGTATAACGAAAAAGAACGACCAGAATTTGACAAGAAGGTAGGTCTAAATTCTTTCCTAAATCTCCAAAAAGACATATTTATCTCTTTCAGAACACCTCCTGCACGACGTATTCGTCCTTCGTCCATATCAAACAAGGTCTTGGTCTGTCCACACGAGAAGTTTTTGTATCACCCTCGTTGTGATGATAACGACGGTGCTAGCTCAGCTCTCCTCATTAGCTGGACTGATATGAACACGCCCTTAAAGGATTTTTTCTCGCTAGATTGTTGCGTAGAGTGTAATGCTGCGTTGGTTGCGGAGCATTACTGTGAAGGCGAAGTGTATGAATCGGCCAAGATCTATGTACGTAAGATAACTGATGAACATAGCAAGGAGGATGTTCAAGCCATTCTCGAGAGAGGTGAAGTAATAATAACGGTGGACTCGTGCGAGACTGTTCGTGATGTAAAGTTagaattaatgaaattattttccGTGATGCCGCTGGACCAGCATCTCAGTGTCGATGGCAAGGTTTTGGAAGATGGTGAAATCCTTGGCGCTGCTGGTGTCAGGCCTGgaagtattttattattaaaagttagtagaaatatttttattggTGGTTTCCAAACTTTCCCTAGAGATTGCAACAGGGCCTttttttaa

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q5ZM45	Ubiquitin carboxyl-terminal hydrolase 48 OS=Gallus gallus OX=9031 GN=USP48 PE=2 SV=1
A0A0R4IB93	Ubiquitin carboxyl-terminal hydrolase 48 OS=Danio rerio OX=7955 GN=usp48 PE=3 SV=1
Q3V0C5	Ubiquitin carboxyl-terminal hydrolase 48 OS=Mus musculus OX=10090 GN=Usp48 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan
PF06337	DUSP	DUSP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR006615	Domain	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR050164	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan
IPR035927	Homologous_superfamily	DUSP-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan