Genomic Location: chr9:5510851...5514595
NR annotation: CAB3979656.1, ribonuclease H1 [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families
| CDS |
| ENSLDHT00000052694 |
| Protein |
| ENSLDHP00000048061.1 |
| UniProt accession | Description |
|---|---|
| O60930 | Ribonuclease H1 OS=Homo sapiens OX=9606 GN=RNASEH1 PE=1 SV=2 |
| Q5BK46 | Ribonuclease H1 OS=Rattus norvegicus OX=10116 GN=Rnaseh1 PE=2 SV=1 |
| O70338 | Ribonuclease H1 OS=Mus musculus OX=10090 GN=Rnaseh1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004761 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01693 all species → | Cauli_VI | Caulimovirus viroplasmin | Family | Interproscan |
| PF00075 all species → | RNase_H | RNase H | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017067 all species → | Family | Ribonuclease H1, eukaryote | Interproscan |
| IPR011320 all species → | Domain | Ribonuclease H1, N-terminal | Interproscan |
| IPR002156 all species → | Domain | Ribonuclease H domain | Interproscan |
| IPR050092 all species → | Family | Ribonuclease H | Interproscan |
| IPR037056 all species → | Homologous_superfamily | Ribonuclease H1, N-terminal domain superfamily | Interproscan |
| IPR036397 all species → | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR009027 all species → | Homologous_superfamily | Large ribosomal subunit protein bL9/RNase H1, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10642 all species → | RIBONUCLEASE H1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000287 all species → | Molecular Function | magnesium ion binding | Interproscan |
| GO:0004523 all species → | Molecular Function | RNA-DNA hybrid ribonuclease activity | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0043137 all species → | Biological Process | DNA replication, removal of RNA primer | Interproscan |
| GO:0090502 all species → | Biological Process | obsolete RNA phosphodiester bond hydrolysis, endonucleolytic | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03469 | rnhA, RNASEH1; ribonuclease HI | EC:3.1.26.4 | DNA replication proteins | ko03032 | deepkoala |
Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
