Genomic Location: CBCXTR010000012.1:14079...15808
NR annotation: YP_010756641.1, cytochrome c oxidase subunit II [Eunicella verrucosa]
Species Eunicella cavolini · all data for this species · gene families
ENSLDHP00000049117.1 in ECAVO (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O47496 | Cytochrome c oxidase subunit 2 OS=Metridium senile OX=6116 GN=COII PE=3 SV=1 |
| P26857 | Cytochrome c oxidase subunit 2 OS=Marchantia polymorpha OX=3197 GN=COX2 PE=3 SV=3 |
| O78682 | Cytochrome c oxidase subunit 2 OS=Carassius auratus OX=7957 GN=mt-co2 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0012624 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02790 all species → | COX2_TM | Cytochrome C oxidase subunit II, transmembrane domain | Family | Interproscan |
| PF00116 all species → | COX2 | Cytochrome C oxidase subunit II, periplasmic domain | Domain | Interproscan |
| PF00119 all species → | ATP-synt_A | ATP synthase A chain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011759 all species → | Domain | Cytochrome C oxidase subunit II, transmembrane domain | Interproscan |
| IPR008972 all species → | Homologous_superfamily | Cupredoxin | Interproscan |
| IPR036257 all species → | Homologous_superfamily | Cytochrome C oxidase subunit II, transmembrane domain superfamily | Interproscan |
| IPR001505 all species → | Binding_site | Copper centre Cu(A) | Interproscan |
| IPR035908 all species → | Homologous_superfamily | ATP synthase, F0 complex, subunit A superfamily | Interproscan |
| IPR002429 all species → | Domain | Cytochrome c oxidase subunit II-like C-terminal | Interproscan |
| IPR045187 all species → | Family | Cytochrome c/quinol oxidase subunit II | Interproscan |
| IPR034210 all species → | Domain | Cytochrome c oxidase subunit 2, C-terminal | Interproscan |
| IPR014222 all species → | Domain | Cytochrome c oxidase, subunit II | Interproscan |
| IPR000568 all species → | Family | ATP synthase, F0 complex, subunit A | Interproscan |
| IPR023011 all species → | Active_site | ATP synthase, F0 complex, subunit A, active site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22888 all species → | CYTOCHROME C OXIDASE, SUBUNIT II | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0022900 all species → | Biological Process | electron transport chain | Interproscan |
| GO:0005507 all species → | Molecular Function | copper ion binding | Interproscan |
| GO:0004129 all species → | Molecular Function | cytochrome-c oxidase activity | Interproscan |
| GO:0042773 all species → | Biological Process | ATP synthesis coupled electron transport | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0015078 all species → | Molecular Function | proton transmembrane transporter activity | Interproscan |
| GO:0015986 all species → | Biological Process | proton motive force-driven ATP synthesis | Interproscan |
| GO:0045263 all species → | Cellular Component | proton-transporting ATP synthase complex, coupling factor F(o) | Interproscan |
ENSLDHP00000049117.1.Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
