Genomic Location: chr9:5470673...5474135
NR annotation: XP_028406309.1, eukaryotic translation initiation factor 2 subunit 1-like [Dendronephthya gigantea]
Species Eunicella cavolini · all data for this species · gene families
| CDS |
| ENSLDHT00000054047 |
| Protein |
| ENSLDHP00000049206.1 |
| UniProt accession | Description |
|---|---|
| P05198 | Eukaryotic translation initiation factor 2 subunit 1 OS=Homo sapiens OX=9606 GN=EIF2S1 PE=1 SV=3 |
| P68102 | Eukaryotic translation initiation factor 2 subunit 1 OS=Bos taurus OX=9913 GN=EIF2S1 PE=2 SV=2 |
| Q6ZWX6 | Eukaryotic translation initiation factor 2 subunit 1 OS=Mus musculus OX=10090 GN=Eif2s1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006855 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00575 all species → | S1 | S1 RNA binding domain | Domain | Interproscan |
| PF07541 all species → | EIF_2_alpha | Eukaryotic translation initiation factor 2 alpha subunit | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003029 all species → | Domain | S1 domain | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR011488 all species → | Family | Translation initiation factor 2, alpha subunit | Interproscan |
| IPR024054 all species → | Homologous_superfamily | Translation initiation factor 2, alpha subunit, middle domain superfamily | Interproscan |
| IPR044126 all species → | Domain | IF2a, S1-like domain | Interproscan |
| IPR024055 all species → | Homologous_superfamily | Translation initiation factor 2, alpha subunit, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10602 all species → | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0003743 all species → | Molecular Function | translation initiation factor activity | Interproscan |
| GO:0005850 all species → | Cellular Component | eukaryotic translation initiation factor 2 complex | Interproscan |
| GO:0006413 all species → | Biological Process | translational initiation | Interproscan |
| GO:0033290 all species → | Cellular Component | eukaryotic 48S preinitiation complex | Interproscan |
| GO:0043022 all species → | Molecular Function | ribosome binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03237 | EIF2S1; translation initiation factor 2 subunit 1 | - | Translation factors | ko03012 | deepkoala |
Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
