Gene detail

Detailed information of ENSNOVP00005005413.1 in Eunicella verrucosa

Genomic Location: :...
NR annotation: XP_028412124.1, DNA polymerase delta catalytic subunit-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSNOVT00005005413

GTTGCGCGAGCGTGCAGTACCGGTACTTAACATGACGCACATCTTTACAGAAGAACCAGAAGAACCAACATCCCGAATCAGGCAgggacGAGTCCTCCCCAGTCCTCCCCGTGGCGCCGCCACTGATCTTTCCTAGGACAACACATACATTGTTCTATGCATATAGtgaaattaaataatattaaataatattggAATAAAATGCCTATACCCAGCAATTGGGAAGTGAAGGTATATCTATATGATTAGTCGACTCTTTTCTCGTAATTGTGGGTAAGGAAACGTTAGCCAGGGCCCAGAGCAGATTGCCCCTCCCTCGTCTCTGAGTGGCCCTGTATTTCTCTGCAGTACTCGTAAGTAACTTGTAGTGCAAGAAACAGTCTTGGAATCTGTGACTATTTGATTATTTGCAACAGTGCATGAAAGATACATTCATCAGAATCTATCCATTATGGTGGGCTTTATATAGTTAAAGGAACCATTCATGATTTATTAGGGGGGATTGGAGTGGGTGTTTTCagatatttaatgttgttttccTGTGTTACCCACTTTAGCCAAACATAAACATTCAGGTCCCCACTAATTGGTAAGCAATAAATCCCCTTTAAAAATTAACTATGAAATGTTGAGTAAACAGTACTTTTAAAAGGTGGTTTTTTGACGTTCAAGAATGGTCTCTTTTTATGTTTGTCCATTCCGACAACTAACGAAAAGGCATTGCAAGCGAATTTAGCAAAGGCGTaaataaaattgacaaaaataagcatgataaagttgtacatttcaggGCGGTGTCTAGTATATTTTCAACCTGCCAATTTGCCGGTTCGACATCGAACGTTGAAAGGCTCAAAACCCATGGGTCTCATGTTTGCTCACTCTATAATTTTGTTTGTGCAAAggtaataataaaaatgttataaaaaatgataatttaggTTTTAGAAATCATTGGTTTTTTTATCAGGAAGCTGTGCGCTGACACTCTCCTACAGGATTTTGGCGGACATTTTTATAAACGCAAAATTTAATCGAGTCCAGAAATGTAATAACACCCAAATAAAGTTTCACATTTATTAAATCTTAGCTTTGAGTTTCTCATATTGGCTAGAAGTCataaaaatatctatatttCACACAGGTAAcattttataaagtaatatattCAACTTACATTTACGCCTggccatatttgtttacatatcAACATTCAAATTTCCATATTTACTTTGACATCGACATAATTTCAGATTCGAACTTTTATGGTTGGAATGCCTATACTATGACATCGTGTGAACCACTGACACCTCGATCAAAACGAAGAACGGACACGATTCTGAGTAcagattaaaaatattattttaaacACGGTTGGCCTTGTTTGGGAGAGTGTCAATAGAAGAGAGAATCAAACACATAAATTAATTCAGaattaaaaagaaataaaaaatgcgAAAATTGGTAGGTAAATATACCCAAATTAATTTCAGATTCGGAAGTTTTACAATTGGAATGCCTATATTATGATATCGTGTAATTAACCACTGACATGCACCTCTATCAAAGCCAGGTACGAACACGATTCTCTGTACagaatattattttaaactACCTCTATTTAACTTACAATTGATCAACCGGGATTACAAAATTCTACAAGTCATTATTATGGATTAATTATGCATagtcaggtcgtttattgaattAAACCCTGCTGTAACATTTGGCTTGTCTCCTAGATATGAATAGATATAAACTCTCTGGTATTATTTCTCTAGCATGGTCACTATCAATACTAAACCACCCTGATTTATGACTACCTGTATTTTCTAACTCTTTTcgaatattatgtaatatattatggaCCAGTTCATTGGGAGTAAACTTCATACGTATTAGAACATATGAACAAAAAATTCGCACGCAagcgtttgttatttaatacgagaaagtccaaAAGAATTTCACATACCTGGCTCAAGAAtttctattgaactttctcgtattaaataacaaacgcctgcgtgcgaattttttgttgatatgttctaatacgtATGAAGTTTACTCCCAATGAAAAAGACTTTAACATTTGAGGAAATGCTGTTTCTAcatcgacagtgaacatatattgtGTTCAATAAGCATTTGGATCCGGAGTTACACATGTGCGAAAATCGCCATTTTGAggtgtggtcattttcaggcattttgTCCCGGATTCacgtcatg

Transcript

ENSNOVT00005005413

Protein

Uniprot

Uniprot term	Description
P52431	DNA polymerase delta catalytic subunit OS=Mus musculus OX=10090 GN=Pold1 PE=1 SV=2
O54747	DNA polymerase delta catalytic subunit OS=Rattus norvegicus OX=10116 GN=Pold1 PE=2 SV=1
P97283	DNA polymerase delta catalytic subunit OS=Mesocricetus auratus OX=10036 GN=POLD1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14260	zf-C4pol	C4-type zinc-finger of DNA polymerase delta	Domain	Interproscan
PF00136	DNA_pol_B	DNA polymerase family B	Family	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR025687	Domain	C4-type zinc-finger of DNA polymerase delta	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR006134	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR042087	Homologous_superfamily	DNA polymerase family B, thumb domain	Interproscan
IPR050240	Family	DNA polymerase type-B	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10322	DNA POLYMERASE CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006261	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006287	Biological Process	base-excision repair, gap-filling	Interproscan
GO:0006297	Biological Process	nucleotide-excision repair, DNA gap filling	Interproscan
GO:0008296	Molecular Function	3'-5'-DNA exonuclease activity	Interproscan
GO:0043625	Cellular Component	delta DNA polymerase complex	Interproscan
GO:0045004	Biological Process	DNA replication proofreading	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20183	VPS39, VAM6; Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39	-	Membrane trafficking	ko04131	deepkoala