Gene detail

Detailed information of ENSNOVP00005012741.1 in Eunicella verrucosa

Genomic Location: :...
NR annotation: CAB4014311.1, E3 ubiquitin- ligase TRIM71-like [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSNOVT00005014338

agaacagtttagaactgatagagctatccagtataaataaagttcgtttagcttaggtttcctcctgtagtaacactggatcaataagagatgatccttactggatctctaggaagaacagtttagaactgatagagctatccagtataaataaagttagtttaggtttccttctgtagtaacactgcatcaacaagagatgatccttactggatctctaggaagaacagtttcgaactgatagagctatccagtacaaataaagtagttttagttcaggtttcctcctgtagtaacactgtttaggtttcctcctgcagtaacactggatcaataagagatggcgCCGCTAATGAACCTCTAGAGAGACAAGTTTAATCACTGATagtgctatccagtataaataaagttagattcGTTTGATCTTTCCAATACAATGCTGATTATTTTTCATGTGACAATGGTTGAAACAAGCTGCAACGACACTGAAACGGGTTGCGAACAGGTCATTATATAATGATAATTAAAACAAGCTATGCTAACGCAGTTTGATATCGATTAACTTATTTTGTGTCCctatcaaacgagaacaagagttgaatgagagttgagaagcgggagtttgcatgagagttttctcgaCTCTTGTGTCCctatcaaacgagaacaagagttgaatgagagttgagaagcgggagtttgcatgagagttttctcgaCTCTTGTGTCCctatcaaactgagagttgagaagcgggAGTTTGCATGATAGTTTTCTCGACTCTTGTGTCCctatcaaacgagaacaagagttgaatgagagttgagaagcgggagtttgcatgagagttttctcgaCTCTTGTGTCCctatcaaacgagaacaagagttgaatgagagttgagaagcgggagtttgcatgagagttttctcgaCTCTTGTGTCCctatcaaacgagaacaagagtgcatgagagttttctcgaCTCTTGTGTCCctatcaaacgagaacaagagttgaatgagagttgagaagcgggAGTTTGCATGATAGTTTCTCGACTCTTGTGTCCctatcaaacgagaacaagagttgaatgagagttgagaagcgggagtttgcatagaagcgggagtttgcatgagagttttctcgaCTCTTGTGTCCCTATcgaacgagaacaagagttgaatGAGAGTtgaatgagagttgagaagcgggagtttgcatgagagttttctcgaCTCTTGTGTCCctatcaaacgagaacaagagttgaatGAGAGATGATCAGAGTTgaaaagcgagagtttacatgagagttttctcaagtCTCGTGCCCATCaaggtcaaacgagaacaagggttgcatgagagttgatgagagttgacaagcgagagtttacataaGAATTTTCTCGATTCTCAATTCGGTTCTTATTGTCAAAATGACAAACATGAGAAGTCAATGAGAGTTGGCGTTGTCAAATACGAGCGTGAGTCGAAGTCCTATCCTCGTTGAAGTCTTGCTAGGACTTTATGCTTTCCTGCACACGTGTATATAACACGCGTACGTGTCATAAGAATCATTAATCTTCGCAAAGCGTGTAGGAGATAACATATTGATAAACTTTTTGTCAGAGCTTAAAAGAAAGGGCAGCTGCGTGGTTGCTTTCAAACTCTATAAGACTATTACTATTAAATTCTAAGAAGAAAAAACACGCTAATGCTTAAACAAATGATTACTGTCCATACAGTAAAGGGATTGTAGCTATATAGATATATTTATACTCCATAATATATTCTCCTATGCTCTCATGCACATGTCATTGGGTCACCCCCGGATGCAGccctagttcagacgtcaaaCGTTTCATGTACCGAACCTATTGTTAATGACCTAAGGTAGGAATTTTTGATGAGCTTTGCATATCATGATGCACGATTCACGaattaacaacttgtaacaacgAGTGACTTTCTGGATTCCAAGGGGAACAGTTGGGTTTTCAAAACAGCAAAAAGACAATGGTACATTCCGATCCGACTGGATTGCATCacgaacagtgaaatttccaaaacaatgaaattaaaacaaaatgaaacatTAATAATTTCGATCAT

Protein

Uniprot

Uniprot term	Description
E7FAM5	E3 ubiquitin-protein ligase TRIM71 OS=Danio rerio OX=7955 GN=trim71 PE=1 SV=1
Q1PSW8	E3 ubiquitin-protein ligase TRIM71 OS=Mus musculus OX=10090 GN=Trim71 PE=1 SV=1
E1BJS7	E3 ubiquitin-protein ligase TRIM71 OS=Bos taurus OX=9913 GN=TRIM71 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17170	DUF5128	6-bladed beta-propeller	Repeat	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan