Gene detail

Detailed information of ENSNOVP00005022974.1 in Eunicella verrucosa

Genomic Location: :...
NR annotation: CAB3994239.1, pre-mRNA 3 end processing WDR33-like isoform X1, partial [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSNOVT00005026064

CCACAGGGAGGAATATAAATCTTGCTGCCAGAGATCCAAGATTATTGATCACATCATAAACACCTTGCTGGGCAAGGGTTAATGCATTGAATAAAGTCATCAAATATCGTTCTCCTTCAGTAAGGATTTGCTTGAGTAAAGATTGCTTGAAAAAACTCCAGGTCAATGAGAGTAAATCAAAGTTCATTGATTTACGTCTGGGCAAAATGTCGTTAAATGTTTGCAATGGAAATTCTTTGTCCTTTTGTGTCCTTTTAGTAACGAAGTGAGAGAAGTAAGCATAGTATGAGGTCCAGCCATTAATTCCAGTACAGCACATTAGCTGCAATGATTTATACGTATTTTCACAAGATTCGTGTAATAATATAAATACCGATCTTAAATGAATGTCAAACTTTCAGCCAAAATTACCCACGCATCAAACTCACACAACAAAACCGGCAGTGAAATCTGATCATATCATTCAAAAGCATATAACAAAACTAGAGAATTATATGATAGTTGGGTTATGCAAAGCAATGCAGTCAGACTGAATGAATGTGGCAAAACTTCTAAAAACAACGCTCTTAGCTTCAAGCGTGTCAGGATAAAAACATTACGACTATATCCAGAAAAAGGGTTTTGAAAGATGTTAATTAGctataaattttgcaaaaagcATTGATCATGGGGCCACAAAATCTTTGCTCGCGCCAACTACAGATTGATACCCGCACGTTTTTGTATTTGAACAAGAAATCGTGTATTCCTTTGAAATAACGTGATCTTAGTTAATGCTGTGTGATGTAAAGCACTGATTAGGAGGTGGCCTATCTGTAGAACGTGTATATCCCCAACACGTTAGGACAACTTGACAACACTAGCATTAACTGTAACACTCAGCAACTTCAAAAGAACATTTTCAGTTTTGTTCAGGACACAGGAAAACAAGACCTGCTTTTGTGTCTGTTTGCTGTGAAAATCCAATTCCAGTCAGAACAATATACAACTCCTGTAATTGTTATGACATATAACAAACTTATATATCAGTAGAAACCGAGTTTTATTTTACTTACATCAGAATAAGACCGAAAACAACGGAGCAGGGTGTAGGATGGAGTCTAACATGTTAAGAGTGAAAAAAGTAAAAGAGTTCATACGTACTTTGAAGACGTGTCATAATAGAACCTACAGCACCATTTACTAAATTTATCAAAACTTCGTTGTCGATTTGTTCGGAAGACGACTGCACATTAGAATGCAGTTGGGCATCATTATGCTTCTGAAACAAAATAATTCAATGTATTACCGACGAAAATATTGTAGTGTTACCAATAACAACACGCAAACGGCAGACAGTATAGATATTAATGTATGTTATTCACGAGGGATGACAGGTATGGCGGGTGTTGTTCCGCATGGGAAAGGTTAATCAAAATGATTCAAATGCATCATAAATCGTTTGAATAGAAACGTCACAGCCTTCCTTGGTCCGGGAGCCTCGTTGTCATGAACGAATAGCCGTTCGTCTTGATTCATGACAGCAACGCCAAGTAAGTATTCGTATAAAGGGTGTATTGATTGCGCATGAACTTTGTACTACGTATGACGGCCAGGCCTCAAGTTGTACGAAAATATCACCAGCCTAATAGGTCAACGTTGTCGTTTTGTAGAGTATCAGACTTGATGACGTGGTACTTTAACATCATTCACTGTACTTTAACATCATTCACTGTACTTTCCTCATCCAACATATTGTACTTGAGAACATGAAAGTGCAATCCTCGTTGTGAAATAATTCCGcttatttttttttcctttCCAGCGAAGATGAATTTAATTCTTTATTACTTAACAACATCGAGTAAGCTGCAGAAAAAATACGTTTTAAATGCCTTACCTTTGCTATCGtcaatttcaaatttataatAGCCGACGTTTAGCCTCCCATTTTCGCGAATGAGCGCCTGGATATGTACGCTGTGCCCATTCTTTTAGAACAACTTCTGGAACAATGGTACTTTGAATCTGTACAAAATAAATAAGAGTAATCAGATGAGTATATTAGGACCCCACAGTTTGTATGCGCAATCTATATTATGAAATTATGCATAAATTGGCATACTGGAGTCTCAGACAGGCTGGTGAAAGTCAGAAGTCACAACGCGAAAATTACACTGGATATGTATATCACAGTATGTCtcttaggccccagttacacgataccggattcgACGACATGACAAGAACGACGAAGTATAATAGAACAATTTCATT

Transcript

ENSNOVT00005026064

TAATAACTCTCTTCCACAGGGAGGAATATAAATCTTGCTGCCAGAGATCCAAGATTATTGATCACATCATAAACACCTTGCTGGGCAAGGGTTAATGCATTGAATAAAGTCATCAAATATCGTTCTCCTTCAGTAAGGATTTGCTTGAGTAAAGATTGCTTGAAAAAACTCCAGGTCAATGAGAGTAAATCAAAGTTCATTGATTTACGTCTGGGCAAAATGTCGTTAAATGTTTGCAATGGAAATTCTTTGTCCTTTTGTGTCCTTTTAGTAACGAAGTGAGAGAAGTAAGCATAGTATGAGGTCCAGCCATTAATTCCAGTACAGCACATTAGCTGCAATGATTTATACGTATTTTCACAAGATTCGTGTAATAATATAAATACCGATCTTAAATGAATGTCAAACTTTCAGCCAAAATTACCCACGCATCAAACTCACACAACAAAACCGGCAGTGAAATCTGATCATATCATTCAAAAGCATATAACAAAACTAGAGAATTATATGATAGTTGGGTTATGCAAAGCAATGCAGTCAGACTGAATGAATGTGGCAAAACTTCTAAAAACAACGCTCTTAGCTTCAAGCGTGTCAGGATAAAAACATTACGACTATATCCAGAAAAAGGGTTTTGAAAGATGTTAATTAGctataaattttgcaaaaagcATTGATCATGGGGCCACAAAATCTTTGCTCGCGCCAACTACAGATTGATACCCGCACGTTTTTGTATTTGAACAAGAAATCGTGTATTCCTTTGAAATAACGTGATCTTAGTTAATGCTGTGTGATGTAAAGCACTGATTAGGAGGTGGCCTATCTGTAGAACGTGTATATCCCCAACACGTTAGGACAACTTGACAACACTAGCATTAACTGTAACACTCAGCAACTTCAAAAGAACATTTTCAGTTTTGTTCAGGACACAGGAAAACAAGACCTGCTTTTGTGTCTGTTTGCTGTGAAAATCCAATTCCAGTCAGAACAATATACAACTCCTGTAATTGTTATGACATATAACAAACTTATATATCAGTAGAAACCGAGTTTTATTTTACTTACATCAGAATAAGACCGAAAACAACGGAGCAGGGTGTAGGATGGAGTCTAACATGTTAAGAGTGAAAAAAGTAAAAGAGTTCATACGTACTTTGAAGACGTGTCATAATAGAACCTACAGCACCATTTACTAAATTTATCAAAACTTCGTTGTCGATTTGTTCGGAAGACGACTGCACATTAGAATGCAGTTGGGCATCATTATGCTTCTGAAACAAAATAATTCAATGTATTACCGACGAAAATATTGTAGTGTTACCAATAACAACACGCAAACGGCAGACAGTATAGATATTAATGTATGTTATTCACGAGGGATGACAGGTATGGCGGGTGTTGTTCCGCATGGGAAAGGTTAATCAAAATGATTCAAATGCATCATAAATCGTTTGAATAGAAACGTCACAGCCTTCCTTGGTCCGGGAGCCTCGTTGTCATGAACGAATAGCCGTTCGTCTTGATTCATGACAGCAACGCCAAGTAAGTATTCGTATAAAGGGTGTATTGATTGCGCATGAACTTTGTACTACGTATGACGGCCAGGCCTCAAGTTGTACGAAAATATCACCAGCCTAATAGGTCAACGTTGTCGTTTTGTAGAGTATCAGACTTGATGACGTGGTACTTTAACATCATTCACTGTACTTTAACATCATTCACTGTACTTTCCTCATCCAACATATTGTACTTGAGAACATGAAAGTGCAATCCTCGTTGTGAAATAATTCCGcttatttttttttcctttCCAGCGAAGATGAATTTAATTCTTTATTACTTAACAACATCGAGTAAGCTGCAGAAAAAATACGTTTTAAATGCCTTACCTTTGCTATCGtcaatttcaaatttataatAGCCGACGTTTAGCCTCCCATTTTCGCGAATGAGCGCCTGGATATGTACGCTGTGCCCATTCTTTTAGAACAACTTCTGGAACAATGGTACTTTGAATCTGTACAAAATAAATAAGAGTAATCAGATGAGTATATTAGGACCCCACAGTTTGTATGCGCAATCTATATTATGAAATTATGCATAAATTGGCATACTGGAGTCTCAGACAGGCTGGTGAAAGTCAGAAGTCACAACGCGAAAATTACACTGGATATGTATATCACAGTATGTCtcttaggccccagttacacgataccggattcgACGACATGACAAGAACGACGAAGTATAATAGAACAATTTCATTGCATCACGTTCCATTGTTTTGCATGCGCAGACGGAGCTATTGCCTTGGAGAGTTAAggttattttataacatttcattcGGTTTGATTATATAGTATTGTCAGCTTTTGCCTTGCTGTTctggcaatggaagtgttctGTCACAAGTCACTATAGTCTGCAAAATTTGCCTATTTGGCCTCAGGGTATTTTGTGAAAACCCTGGCTCGCGAGGTTGATTTGGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR052060	Family	Bromodomain and WD repeat-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16266	WD REPEAT DOMAIN 9	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007010	Biological Process	cytoskeleton organization	Interproscan
GO:0008360	Biological Process	regulation of cell shape	Interproscan