Gene detail

Detailed information of ENSNOVP00005022987.1 in Eunicella verrucosa

Genomic Location: :...
NR annotation: XP_028403797.1, TATA-binding protein-associated factor 2N-like isoform X2 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSNOVT00005026084

GTGGCATTTCTGTGCATAAATACGAGTGGGGAGAGAAACGAGAAAAGGGAGAAACGAGCGAGTTACTTCCGCTATCCCCCCCCCATTGCCCTCCCCCTAGTGCCTCATACCTCTCATTTCTCTCTTTACATTACATTTCCCCATGCTCTTCGGTGCAGGCAGCCAGTACCAAAAATCCCAAATTTACTATAAAATCATCAGGGGTGCTCTGAAGTTAGATCTGAAATTGCAACGTCATACTCgagggatgacgtcatttggcaaCATGGTGGAGTATTCAGAGCAAGATTCATGTTAGTATTTAGCTAGTGATACTTATGATAACCATATATGGTAGAAGAGCAATGACATTGCCTGTACAAGTTTAGCTTTGTGTTCTGTACATCATTCAGCACAATACACACAGGCTGACGAACTTCCTGTAGGGACCTACATACAATAtgaaaatatggaaatttttgTCGTCTGAATTCATACGTACCTTCACGTGATGTAAAACTAAACTAAGCGTAATATTATTTATACGTCTGGACGTCTGAACATATTTATCAGTTTACCGTACCTTGCACTGTTTCATCTCTGGCGCCAAGAAAAAGGCAACGCCTTTTCGAACCtgtgttaagccggttttccactaggcgaatttgttcgcgcgaacagaaaaaCAGCagcttgattggctggcgacaaacactgatgacatcaccagccaatcacattcgatTTTTCCTTGTTCGcgcttagtggaaaaccggctttacTCGGTTTTCCAGAAGATATCCATGATACTTTTTACTatattaataaacaaattattagGCCATGTCATACTATATGTTAAAGTTTGTGAGTTCATTGGAAACAGGTACAATATGCAATCCTGTTTTCACTGGCTGCTCTGTTTTAAGTTGATGAATGAAAAGCCCTGATATTGGTAGTACTGCATGGATACCTGGCTGctgtgaacgaacaaacttcaTGGTAGGTATAATTCATTGCATCTGAAAACTCGTGCATAAGGAATGATGAACATTTTGTCATCACGTAATCATCTTACCGTCACTTCTAGTGCACGACTGTTTACGCTGAGATTCGTGGACCATTTCTAGTAAATTCTTTACCAAATCGGGTCTTTTATAAAGAATTGTATTGCTCTTTTTCAAAGTAATCCTTACATCTCCTAACGGAAAATTTCTCAAAAGGAATGGATTTTCCAGCTAATCGTTGCTTAAGTTCTGGAGCTTTTCTACGTGAAAAACGAAAATAGAaaaacgaaaatttaaaagatgcATGTTTGTAAAAAGTTTGGTGTTTTGCTCTCGCCGTTTTTGAGTCGTTGAAAAAAAGCTTGACGAAAAAGTTTACAACTGTTGGCTTTGTGTTCTTCACTCGAAAAAGTCGGATTTTTGCCTCGTCCTAACCACACAACGTTTAATCAGTTCTCAGATTTTTTGTGTTCTCATGATCTTATTTCAGTATTTGGTAAAATTGTCagattgttttattttgttgtcTAACTTGTAATAAATCGAACgcgaggtctgtacagagaaatatcgaaCCGAGGTCTTTTTTGTATGTAGAAACCGATCCCAGCaaggttaataaaaagtttatgaTATATATGGCATGTACATAAATGCGTGGTACATATTTGGACGAAGAACGCAAAAAAATACCAATGTATTCTTCTCCACTAAAAATCATTTGCAGATACCGTAATCTTATCATACATCATACAAACCTAAACATTAAATCTTCCCTGTCCTCCTCTGTTTCATTTTCAAGAGTAATCGCGCCGCATTTGGGGTCAATCCTACCCATCAATTTAAACACTGCGCAGAAATACATGTATGAACActaaaacaaaaatatcaagcaaactTTCGTCAAACATACAAATTAAAGACCTAAACCGAACAGCAAACCCCTAAAACTCTCGGATGTTAAGACATATAAAgtaggggccagttgttcaaaagtgggttaacttaatcctggattaacgtaaaattcaaagcagacttcccaacagcctgtttaaaaatttagaaatattttgtcacaaatcttatctgggtcatcagaagttcaatttcataacgttctgaaattgacagacgtgcagaaatacctaaaccaaaacaatgggttaaattttagccctgggttagcgctaatcgtgctttgaacaaccggccctatAGATA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04774	HABP4_PAI-RBP1	Hyaluronan / mRNA binding family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006861	Domain	Hyaluronan/mRNA-binding protein	Interproscan
IPR039764	Family	RNA binding protein HABP4/SERBP1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13199	SERBP1; plasminogen activator inhibitor 1 RNA-binding protein	-	Spliceosome	ko03041	deepkoala