Gene detail

Detailed information of ENSNOVP00005023414.1 in Eunicella verrucosa

Genomic Location: :...
NR annotation: CAB3980655.1, rho guanine nucleotide exchange factor 17 isoform X1 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSNOVT00005026629

tacattattcTGTTGAAGTCCATGCTGTTACCAGCTTATCATTGTgcaaatttcataaaatctgcaAAGTTACTATAAGGTGAATACGGATAGACCAAAGCATAAGAAATTAACATTGGGTACGTAATTTAGGTTTATCAAATGTCCAATCCAGGAAATAATTGCCGCACATTTGATGCATTTGCCTAATTTAAATCGTTCCGAAATTCCTAACTTCTACTCCCCCTCCCCGGTTCATTCATAGTAAAACCAGAACACAACGTAATATCCGCCTTCATTTTGCTGTGAATGCATGCAAATTGCAAAGTAAAAGACATCCTGTTTTGGGATCCTTTGTCAGGCACTGTAAATTAAACGTCGATCAACCAGCCAGGAAGCAGTCGGtacgagcggcagatctgtatggggatttacatcTCCATATGTGGATTTACATCCCCATTTATATCCCCATACAGATATGACAGGATAGGCGTgtccaatatatgaatattaatgaggagcatttgtaagaaggaaaaaattatttcagatgTGCAAAGGATTTTATTCATCAGTAAACACCGAAAATgaagctcgccgactgtcggcgacaaatgaaaaccagcgtgtaatatcctctatatatttgttaattttCTATGGCTTtgtaaataaacttgaaattaTGAATCagtaGTCGTTGTTATGGCATACGAAAGGGGGTCATTAGGAAGCTAGATAACTTCTTTTTCTtatgtaattttaaaaagaacaaaacaatagacactccgaaaatagttaacattttattcaacgtttcgactaggttgcagtttttacccttttttccgcttccgccattccgtttccTTACccgtgtatgaacgtaatttttgcatagtcataaaagATAAGGGTCTtatctcagctgttgaatgacctgtttttgtgtcattttaagcaaaacagaacaaatattaGCCTGCACGGCTGCACCTATGTTATAGAGTCTGCAGGctaaacaaatatgagaacgatataAATTGTCGGTCGAAGTCACATATTTTCACTTCTGTGCCTAATCAAAGCAGtccataacaaaagaaaaatgcaattaatcacgaatgttatggtaacaaagaatttacagctgggtttacaagattttaccaggattagTAAAAATTATGTATATGCAGGTCGTTCATTGTAGTGAAGTTCGTCACCTTCGAGTCCCAGagagagtaaattttcaataaagtttAGCCTCAACTCTctacggtgaaaatatgcgatttcgaccggcaatttttaataggtccatacttgctctgttttgctcaaaatggcacaaaaatctTGTCATTCAATTGATGAGTTATAAAGTCACGATTCCATGAATTAAAATCTGAAACTGGGACGTATATGAGCGTAACGTCTGTGAATTGCCTAATTTTacgccactggtaaCCACTGTATAAGATACAAAATGGAGAAACATACCAAAGTTAGACTAATTTCACTTagagcgttaattggggagggggggggggtatattcatatattcgtgttatgcccgacgaatttcttttgaaatcagttgtttttaagttaatttcaaaagaaattagtcgggcagaacacgacttagtatatgaatatacccccccAAGGCGCCATTTGAAAAATGTCATAGTCACTGGGCAGTCAGTGGGTATAAGTATAACGTCATTCGAGTGTGAGCTTTTCTGCCTCGCGACGCCTAATGCATGGTTCAGAAACACTACAAGCCAGGGTAGACTTAGCGTACGTCATATGACAGGGTACTACTTATTCATATTTCCGatcgtgacTTTAGCCATTTTTTCAAAGTCAACGTCGTCTGAAAACAGCGCCGACCACAGCAGCACTGTTGTTCAGTTACGTCACAGCTGTTGCATCTGTCTATTATAGGCAAAGATGCAATATAGTTAAAATTTACCTTATATTTTTAAGTTTCAACTTACGCCAACAAAACCACatttaaaagtttattataaCCATAGCAATTATCTCTTTTCCGTATTTTCggtttatttttcttcgttttgataaTTTTGGACAACTGCACTTTGGACCTAATACACATATTAATAACATATTGCTCTTGGGCAATTGGCAATACGGGAAAAGCCTGCCTCGAGCGTCAGCAGCCAATAAAATTGCGCGATTCGCCAAAACAAATTCTTGCCGTATAGTAAAAATGACTATTGACAAAGTTAACCATAGCTATTTAATTGACCCAAATT

Transcript

ENSNOVT00005026629

atcttcatgcatgataatgcaCTATCTCATACTGCGAAGACAACaacacaatttcttacattattcTGTTGAAGTCCATGCTGTTACCAGCTTATCATTGTgcaaatttcataaaatctgcaAAGTTACTATAAGGTGAATACGGATAGACCAAAGCATAAGAAATTAACATTGGGTACGTAATTTAGGTTTATCAAATGTCCAATCCAGGAAATAATTGCCGCACATTTGATGCATTTGCCTAATTTAAATCGTTCCGAAATTCCTAACTTCTACTCCCCCTCCCCGGTTCATTCATAGTAAAACCAGAACACAACGTAATATCCGCCTTCATTTTGCTGTGAATGCATGCAAATTGCAAAGTAAAAGACATCCTGTTTTGGGATCCTTTGTCAGGCACTGTAAATTAAACGTCGATCAACCAGCCAGGAAGCAGTCGGtacgagcggcagatctgtatggggatttacatcTCCATATGTGGATTTACATCCCCATTTATATCCCCATACAGATATGACAGGATAGGCGTgtccaatatatgaatattaatgaggagcatttgtaagaaggaaaaaattatttcagatgTGCAAAGGATTTTATTCATCAGTAAACACCGAAAATgaagctcgccgactgtcggcgacaaatgaaaaccagcgtgtaatatcctctatatatttgttaattttCTATGGCTTtgtaaataaacttgaaattaTGAATCagtaGTCGTTGTTATGGCATACGAAAGGGGGTCATTAGGAAGCTAGATAACTTCTTTTTCTtatgtaattttaaaaagaacaaaacaatagacactccgaaaatagttaacattttattcaacgtttcgactaggttgcagtttttacccttttttccgcttccgccattccgtttccTTACccgtgtatgaacgtaatttttgcatagtcataaaagATAAGGGTCTtatctcagctgttgaatgacctgtttttgtgtcattttaagcaaaacagaacaaatattaGCCTGCACGGCTGCACCTATGTTATAGAGTCTGCAGGctaaacaaatatgagaacgatataAATTGTCGGTCGAAGTCACATATTTTCACTTCTGTGCCTAATCAAAGCAGtccataacaaaagaaaaatgcaattaatcacgaatgttatggtaacaaagaatttacagctgggtttacaagattttaccaggattagTAAAAATTATGTATATGCAGGTCGTTCATTGTAGTGAAGTTCGTCACCTTCGAGTCCCAGagagagtaaattttcaataaagtttAGCCTCAACTCTctacggtgaaaatatgcgatttcgaccggcaatttttaataggtccatacttgctctgttttgctcaaaatggcacaaaaatctTGTCATTCAATTGATGAGTTATAAAGTCACGATTCCATGAATTAAAATCTGAAACTGGGACGTATATGAGCGTAACGTCTGTGAATTGCCTAATTTTacgccactggtaaCCACTGTATAAGATACAAAATGGAGAAACATACCAAAGTTAGACTAATTTCACTTagagcgttaattggggagggggggggggtatattcatatattcgtgttatgcccgacgaatttcttttgaaatcagttgtttttaagttaatttcaaaagaaattagtcgggcagaacacgacttagtatatgaatatacccccccAAGGCGCCATTTGAAAAATGTCATAGTCACTGGGCAGTCAGTGGGTATAAGTATAACGTCATTCGAGTGTGAGCTTTTCTGCCTCGCGACGCCTAATGCATGGTTCAGAAACACTACAAGCCAGGGTAGACTTAGCGTACGTCATATGACAGGGTACTACTTATTCATATTTCCGatcgtgacTTTAGCCATTTTTTCAAAGTCAACGTCGTCTGAAAACAGCGCCGACCACAGCAGCACTGTTGTTCAGTTACGTCACAGCTGTTGCATCTGTCTATTATAGGCAAAGATGCAATATAGTTAAAATTTACCTTATATTTTTAAGTTTCAACTTACGCCAACAAAACCACatttaaaagtttattataaCCATAGCAATTATCTCTTTTCCGTATTTTCggtttatttttcttcgttttgataaTTTTGGACAACTGCACTTTGGACCTAATACACATATTAATAACATATTGCTCTTGGGCAATTGGCAATACGGGAAAAGCCTGCCTCGAGCGTCAGCAGCCAATAAAATTGCGCGATTCGCCAAAACAAATTCTTGCCGTATAGTAAAAATGACTATTGACAAAGTTAACCATAGCTATTTAATTGACCCAAATTTTGACAATCACTTTATTAAATTTATAGGTATCATATATCGCTAGTTGATTTGGAATAACAGTAACATGCAGCATTAGTCACATGAAACTACATCTAGCCACTGAAGATATTTTTGAATGGATTGCACCAAATTAGGAGCGGCCTCTTTTTCAAGTAGACATGTTGAGTTGTCAGACGGCCTGCTGTATCCAAGCACTTGGGCTTCGTGGTCGCTTGGACAAAATACTGTAAAGAAAATTTCACGAAGTTAAAACTTTACTAAAGGCCGGTTtgtactcaggaaaataagcatcggagcGGACTGGGCTTCTtaccatcttgtattatccgcaccgcagAAGAAAAAGGTTGTAATTATTTTAACTATTTATCATCTGGGTTAGCGGATCACatgttcaaactggaacaggaAATTGGCATCGAAGGCCCAtccgcgggttcaattttgttccgattcggtccgatccgatgcttattttcctgagtggaaaccggccttaacatgGATAAAAGTTTTTGCAACAACTTGTGGGACGGAAGGCTGGAAGCACAATTCTGCCAATTCTGACAGTTTGTTTTGTGCAATAGATTTctaaaattttagaattttattcttatttcaaaacaaatatttaattgCTTATGATTCCTTGTCTGCTAAGTGCAACGATCGAGCAATTAATAGATCGAGTGTATTAAAAAATAACTCACTATTGATATTACAGCCTCCTCGCAAACATTACTGTGGGTTAAATCCACGGACGTTCCTTGACATGCAAGTAGCTAGCTGCACACACTTGACGCACCTATAAACGCTTTGTGGAGTTTTGTTATCCCTGATCGTCTCATGAAGACAATGGGCAGATGGCTCAGTGACGCTTATCAAATGTACATAcggactccccccccccccgcccgtcCTCTCCCCACCTCTCATTGTAGTAGTATGCGTGATCTCATTGTAGTAGTATGCGTGATCTCATTGTATGC

Protein

Uniprot

Uniprot term	Description
Q96PE2	Rho guanine nucleotide exchange factor 17 OS=Homo sapiens OX=9606 GN=ARHGEF17 PE=1 SV=1
Q80U35	Rho guanine nucleotide exchange factor 17 OS=Mus musculus OX=10090 GN=Arhgef17 PE=1 SV=2
Q9GQF1	JNK-interacting protein 3 OS=Drosophila melanogaster OX=7227 GN=syd PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19057	PH_19	PH domain	Domain	Interproscan
PF19056	WD40_2	WD40 repeated domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039919	Family	Rho guanine nucleotide exchange factor 10/17	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12877	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20317	SPAG9, JIP4; c-Jun-amino-terminal kinase-interacting protein 4	-	Membrane trafficking	ko04131	deepkoala