Gene detail

Detailed information of ENSNOVP00005027067.1 in Eunicella verrucosa

Genomic Location: not available for this species
NR annotation: CAB3995124.1, Nicastrin [Paramuricea clavata]
Species abbreviation EVERR · all data for this species · gene families

Sequence

CDS

ENSNOVT00005030718

CGTGTGCCGGGCGAATGAAGTGGTGGGGCTCCTAGGTGGTAGTTCTCCGCCACACAGCCGCCAGTTTACAGTAAACTAACGATCAAAGATAAACCAGGGCctttttttaacatataaatgccccccccccagtcccccCTTGTGCCCACCCCCACGAAATcactttttgcccGTTTGATATCACTGGGTGGATTTGTAGATATATGTATGGGATGTGGTACTTGAAAATCAATGGTTCCTTGACTCTGGTAACTGCGCGTATCTTCAATCTCGCTGTCCTCCTCAGGTGTTTCATCTTTGATCCATGTGTGAATCTTCTCTCCAAAATAGCAAGTTGTTCGTCTGTAAATTTTGTTCTTATTCTTCGTCTCTTGCACTGTCCAGGATTAATGAAAACGCTCCAAGCATCAATATCAAGATTTATTAATCCAAACACCAGTGATTTTATCGTAATAGCAGTGAACAATAGTGATTTGGAAAATAAAACGGTGATGCGTCAATGAAGACGTATCTCCTCAgttgagcattctagtacgccgtaggtGTTTAAACTACTACGTTATTAACATCATAACATTTGCACAGCTCtttgtaattttatatttgactGTATAATCAACCTTCAGTTCTCATGCTCTTCCAACTTGTGCTAGAGACAAGATTGAATTGTAATAGGGAAGAGCACAGcccatttttttatataattacatCACAAATGCTTCCTAATGGCCAACATTTTGGCGCCTGCCTAGCACTGCTGTTTACTTGTTTTTCATGCATTTTTCGTGGCTGTctttttgataaaaaaatacTAATTGACAATAATAAAACTAAAACCAATCATCGCTTACGATAGAAACGTTTCGCGGGAACTACtttggttaaaataaaaaactCGTTATTTTAGAAAAACAGGTATAGGCtagcatgtatatatatactccTGGTGGTAGTTCTCCGCCACACAGCCGCCAGTTTACAGTAAACTAAGCACAAGAAATAAGCGCTTTCTCGATGGTCAACCCATgaacaagttataaaatatcacGAATCTTGGTATCGCTGTTTTGTATAGCGATGTATTATGGTGCATACCTATGTACCTATAGGCTATAAATCCCgtaattacaataaaaataataaaacatgaCAAGGAATATTTTAGGAATTCGTTtttgtttcattgtattttCACTAGGCAGGCATCGGGTGGGGGTGATGAAATTAGTTCCAGATTTTATTATTACTAACACAAAACACTATTCCTAACACAAGATGTAGTCCCCCCACTCCCCCGTGTATATGCCCTTCCAAAATGCTTACGAATTATAAATACAAGCGCAGGGCTTATTGGACTTGCCAAACAATGTATATACTATTTACAACTTAAAACTTAAAATTACATGAGGACAAATTTTAGCCTCCAAATTGATTAATTGAAggccaCCTTTATAAAACCCGCTCAAAAAATTCGGAAATCatatcaatattttaatttgcGTGTGATTGATATCTACCACTTACTTTTGTTAATGGTATTGAAAACAAGGTCATGATAAACAGTCTAGCCAACCAAttataggttattttaaccaattaTTTTACAGTTCATCAATATCAATTTTTTTTATGGGTACTTCAGCGTCTACTCCTACAGTTGCAGGGATCATTGGTCTTGTCAATGATATGCGCTTACAGAATAACAAACCTCCCATGGGATTTTTGAACCCGTTCCTGTATTCCAATAAAAAATCCTTATATGATCCAACCACTGGGGCAGTATCTGGAATGTTCGTCATTTCAATGTTCTGTTCTGCATCCTCATTGTCCATAGTAACATCCCTTGTATGAATATCAGGTGGTGCTCTTGACATGCAATGAACAGGGCAGAGTAAAAGGAAGGAAAGAATCATatgcaggcttaatgcaagttgtttcatcaacttgcagcaagtctgatgttttCAGTCtcgtgtcaaaagaataattatagATTGTAGTTTTCAAACAAGTccattttctcattattgcCTGATAGTTGATACCGTAAAACTTTCATATCTTTGCTTGGCGTTTACCGTCTGATGTACTTAcccg

Transcript

ENSNOVT00005030718

TGTGCCGGGCTCCGTTCGTGTGCCGGGCGAATGAAGTGGTGGGGCTCCTAGGTGGTAGTTCTCCGCCACACAGCCGCCAGTTTACAGTAAACTAACGATCAAAGATAAACCAGGGCctttttttaacatataaatgccccccccccagtcccccCTTGTGCCCACCCCCACGAAATcactttttgcccGTTTGATATCACTGGGTGGATTTGTAGATATATGTATGGGATGTGGTACTTGAAAATCAATGGTTCCTTGACTCTGGTAACTGCGCGTATCTTCAATCTCGCTGTCCTCCTCAGGTGTTTCATCTTTGATCCATGTGTGAATCTTCTCTCCAAAATAGCAAGTTGTTCGTCTGTAAATTTTGTTCTTATTCTTCGTCTCTTGCACTGTCCAGGATTAATGAAAACGCTCCAAGCATCAATATCAAGATTTATTAATCCAAACACCAGTGATTTTATCGTAATAGCAGTGAACAATAGTGATTTGGAAAATAAAACGGTGATGCGTCAATGAAGACGTATCTCCTCAgttgagcattctagtacgccgtaggtGTTTAAACTACTACGTTATTAACATCATAACATTTGCACAGCTCtttgtaattttatatttgactGTATAATCAACCTTCAGTTCTCATGCTCTTCCAACTTGTGCTAGAGACAAGATTGAATTGTAATAGGGAAGAGCACAGcccatttttttatataattacatCACAAATGCTTCCTAATGGCCAACATTTTGGCGCCTGCCTAGCACTGCTGTTTACTTGTTTTTCATGCATTTTTCGTGGCTGTctttttgataaaaaaatacTAATTGACAATAATAAAACTAAAACCAATCATCGCTTACGATAGAAACGTTTCGCGGGAACTACtttggttaaaataaaaaactCGTTATTTTAGAAAAACAGGTATAGGCtagcatgtatatatatactccTGGTGGTAGTTCTCCGCCACACAGCCGCCAGTTTACAGTAAACTAAGCACAAGAAATAAGCGCTTTCTCGATGGTCAACCCATgaacaagttataaaatatcacGAATCTTGGTATCGCTGTTTTGTATAGCGATGTATTATGGTGCATACCTATGTACCTATAGGCTATAAATCCCgtaattacaataaaaataataaaacatgaCAAGGAATATTTTAGGAATTCGTTtttgtttcattgtattttCACTAGGCAGGCATCGGGTGGGGGTGATGAAATTAGTTCCAGATTTTATTATTACTAACACAAAACACTATTCCTAACACAAGATGTAGTCCCCCCACTCCCCCGTGTATATGCCCTTCCAAAATGCTTACGAATTATAAATACAAGCGCAGGGCTTATTGGACTTGCCAAACAATGTATATACTATTTACAACTTAAAACTTAAAATTACATGAGGACAAATTTTAGCCTCCAAATTGATTAATTGAAggccaCCTTTATAAAACCCGCTCAAAAAATTCGGAAATCatatcaatattttaatttgcGTGTGATTGATATCTACCACTTACTTTTGTTAATGGTATTGAAAACAAGGTCATGATAAACAGTCTAGCCAACCAAttataggttattttaaccaattaTTTTACAGTTCATCAATATCAATTTTTTTTATGGGTACTTCAGCGTCTACTCCTACAGTTGCAGGGATCATTGGTCTTGTCAATGATATGCGCTTACAGAATAACAAACCTCCCATGGGATTTTTGAACCCGTTCCTGTATTCCAATAAAAAATCCTTATATGATCCAACCACTGGGGCAGTATCTGGAATGTTCGTCATTTCAATGTTCTGTTCTGCATCCTCATTGTCCATAGTAACATCCCTTGTATGAATATCAGGTGGTGCTCTTGACATGCAATGAACAGGGCAGAGTAAAAGGAAGGAAAGAATCATatgcaggcttaatgcaagttgtttcatcaacttgcagcaagtctgatgttttCAGTCtcgtgtcaaaagaataattatagATTGTAGTTTTCAAACAAGTccattttctcattattgcCTGATAGTTGATACCGTAAAACTTTCATATCTTTGCTTGGCGTTTACCGTCTGATGTACTTAcccgaagcttaaactctctaatgtcCTCGAAAATTACGCGATTatagccggttttccacttggcgaatttgttcgcgcgaacaagcaaaaagcgaatgtgactggttggtgatgtcgtcagtgtttgtcaccagccaatcaagttgcttttttctctgttcgcgcgaacaaattcgccaagtggaaaaccgccTTATGTTCCTATAATGGGACGTTTTACGAAATGAGATGTTTTGTGGATAACGCGCTTTTTAGATTTTTTCGTAAcattatcttttttattttagaCTCTTGGAATGCATGTAATTCAAGCCAATTGAATTTCTGTTTACAATTAACACAGGCCTTTTATTTTATTCAATCTTTTTCATCGGCCTTAAAATGCATTCGCAGAACAAATTTGAGCATAAATAATTCAGTACGACGATTAAAATTTACGATTGAAACTCAATCCGCACACATATTGTAAGTTCGCGTCTTCGTATTCTTGGGATACCTCCAGAAGAAATGCGAACCCGTACGAAATGTTTGCGCATTCTAACGAATCTGCATATATATGCATATGAACTGGGTTTGGAACACGTGTACACCCTATGACACATCAATTGAGCATCAATTAATTTTTGTATAATCATCTTACCACATGAATTATTGGTATATAGTAACCAAAATTGAAAATAGTCAGTGATATAGTCAGCATAGAAAATGCCGGAATACACCATAATGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92542	Nicastrin OS=Homo sapiens OX=9606 GN=NCSTN PE=1 SV=2
P57716	Nicastrin OS=Mus musculus OX=10090 GN=Ncstn PE=1 SV=3
Q8CGU6	Nicastrin OS=Rattus norvegicus OX=10116 GN=Ncstn PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005898 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05450 all species →	Nicastrin	Nicastrin	Family	Interproscan
PF18266 all species →	Ncstrn_small	Nicastrin small lobe	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008710 all species →	Family	Nicastrin	Interproscan
IPR041084 all species →	Domain	Nicastrin, small lobe	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21092 all species →	NICASTRIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016485 all species →	Biological Process	protein processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06171	NCSTN; nicastrin	-	Alzheimer disease	ko05010	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.