Gene detail

Detailed information of ENSNOVP00005029333.1 in Eunicella verrucosa

Genomic Location: :...
NR annotation: CAB3987245.1, E3 ubiquitin- ligase NRDP1 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSNOVT00005033204

ttgctaggcttgtactaatggggGATATTAAGTGATATGagaatttaaaacaacggtgttaccGCATATTAAACAGTCTTGGCTAGCCGAGGACCAATTAAGTTGCGACACTaaagagttgtgtttgactatataataaacttcataaTTTGCGTgaactatttttcattttttgtatTTCGAAAACGGTTTTCGTGTTTTTGGCCAGTTGCAGCAAAATTTCAACAAGAACTGCTGATGCTGTAAATAACGGATAAATTATGTCCGCGTCACGTTACAGCCATTTGAAGTCTCTTATTTTCTTTCTCAGAACACCGTCGTATTGCGTACATCAAAACCAAAACGTCAAAACCAAAAATAACTGACGACATAAGTGTCATATTTTGTTCACAATCGGATTCATGAACAAAATATATCTTAATTCGCGTGCAATTGGAAAACAAATCCTTTCGAGTTTTTAGACCTCCAGTATAATTGCACCCGTTCTTATTTCGGAATCCTGACACTTTAATAAGTCTTTGAAGAACTCACCCGtgcacatttttttcaatattgtaGAAATCGTAATAATCAATTGTACTGAAAACTTACAGCAGCATTCGGTGCTTTCTTGAACAGGAATCCTTCCTTTTCGTAAACAATAGCAGGACTTGCTTGGGGAACTGGAGGACTAATGATCTATATATAAACAAGAGCGAACTTATTACAGGATAAAGACAGATCAGTATTTAAACTAgggagaaaaaaaaatttttatataaagaaattatattataacagtaaaaaacaattgatttcatgCATGTTTTCGTCATATAAAAGCGGACGAGGACTGCGTCATTTGTCCGTCGGCAAACAGAATGTATTAAGTAATTTAAATCAAGGGAATTGCATGTGTGGTTAGAAACCCAAAGACGCCTTTTTTGCCCTTTTGTCGGCAAATTGATACTCACACAACTCCTGCCTAAACGTTTTCGGGACGCGGTCCTGTCTATATGAAATAGCTATTGTCGTATCTTATAGTGATTATAAGAAAACGCTGTCTATAGGGGTTTCctatttttttattcattttcaacatgatTTCCACGCGGGCTCGTTTTTAGATATCGGCGGAAATATAACAAACTCATGTTGTATTACTTCGCTTGACATGAATGAAATAACAAAAATCTCAATCTCAAAATTTGCAGTTATTGCATGCCTGTCAGATTTCAAATATCATATCAGAATAAACGCAAATATCGCGTTTGTATTGTCGAAAATAATGGTTCTCCAAACATGGGGTTTGCGATAGTATATAGGAGTGTAAAAATCAGGAGttactatatattttatagtttcattttttataactaTTTCAACAGAGAATGTTTCTGCCCCATTGCTTGGAGTCATTTCTTCATTGTGTAAAAAAACAATATGTGTAGGTTAAAATTAAAATCCTGCGGAAATCTCTATCTATATAGTTATATGTAGCTATTGTTCCCTATATAACGTCTTTGAGGTGTGCCATAACCTTAACTATAGGTTATAGTCAAGTTAAAGTCGCAGATTCAGTGGAGGAATTAAATCAAAATGGCTATGTCATTTCTACAGAGCTCTTAATCAAACGATATTCtatttctaccttatatttgcACAGTTTACGGAAATTAAGGCAAGGTCCGCATCAAACGAATCGTCAGCcaaatttctttgaagataATTTGACAGATAGGTTTGCTGAATTGCATTTTAAGAACGTATCAAATGTCATTTTTTCTTTCTCGTTTCCTTTTTCGTTTTCGAAATTTCAGGCTGCAAACATGCATGCTAAATCCACAAAAACAAATACTAACAAACACAGTGTGATACTGCTAGCTCTACTATACGGTGTCACATTTCAATGAAtcaataatataaaatttggaaCTTCAACATACATGCAGTAAGGAAAATACTTATACTAAAGAAATACGagttagtatatatatatacacaattttATATGTCCTTAAGCAGACTTAATAGGGCATTTTTCTGACTAAAATTGCGTGTATTACGAACGGAAGTCTAAAAGGTACATATTATGACAATTGACAACCACTTTCATGATCTGAGTAACACGATAAAATTGTTTCCCCTGAACTGTCCGTTCAACTTACATTATCGGTACTGCTGCTCCTGGAGCGAG

Protein

Uniprot

Gene family

Uniprot term	Description
Q25386	Beta-scruin OS=Limulus polyphemus OX=6850 PE=2 SV=1
Q25390	Alpha-scruin OS=Limulus polyphemus OX=6850 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR006652	Repeat	Kelch repeat type 1	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013010	Domain	Zinc finger, SIAH-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003613	Domain	U-box domain	Interproscan
IPR011043	Homologous_superfamily	Galactose oxidase/kelch, beta-propeller	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45632	LD33804P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan