Gene detail

Detailed information of ENSNOVP00005031663.1 in Eunicella verrucosa

Genomic Location: chr4:20337875...20345168
NR annotation: CAB3977476.1, still life, isoform SIF type 1-like isoform X3 [Paramuricea clavata]
Species Eunicella verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IVF5	Rho guanine nucleotide exchange factor TIAM2 OS=Homo sapiens OX=9606 GN=TIAM2 PE=1 SV=4
Q6ZPF3	Rho guanine nucleotide exchange factor TIAM2 OS=Mus musculus OX=10090 GN=Tiam2 PE=1 SV=2
Q13009	Rho guanine nucleotide exchange factor TIAM1 OS=Homo sapiens OX=9606 GN=TIAM1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002876 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18385 all species →	Tiam_CC_Ex	T-lymphoma invasion and metastasis CC-Ex domain	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF15410 all species →	PH_9	Pleckstrin homology domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR040655 all species →	Domain	TIAM1, CC-Ex domain	Interproscan
IPR003116 all species →	Domain	Raf-like Ras-binding	Interproscan
IPR041681 all species →	Domain	Pleckstrin homology domain 9	Interproscan
IPR043537 all species →	Family	Tiam1/Tiam2/Protein still life	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46001 all species →	TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0050772 all species →	Biological Process	positive regulation of axonogenesis	Interproscan
GO:0090630 all species →	Biological Process	activation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSNOVP00005031663.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of ENSNOVP00005031663.1 across 21 RNA-seq samples of Eunicella verrucosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

3TPM > 0

1Conditions

7.1Max TPM

0.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole tissue	21	3	0.75	7.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
ERR11252253	whole tissue	whole tissue	polyp	not recorded	ERP146504	7.11
ERR11252256	whole tissue	whole tissue	polyp	not recorded	ERP146504	4.67
ERR11252254	whole tissue	whole tissue	polyp	not recorded	ERP146504	3.94
ERR11252240	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252242	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252243	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252244	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252245	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252246	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252248	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252249	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252250	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252251	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252252	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252255	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252257	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252258	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252259	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252260	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252261	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00
ERR11252262	whole tissue	whole tissue	polyp	not recorded	ERP146504	0.00

Source: CnidoSite RNA-seq expression matrices (EVERR_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.