Genomic Location: chr7:2965348...2973792
NR annotation: XP_028397111.1, histone acetyltransferase KAT6B-like isoform X2 [Dendronephthya gigantea]
Species Eunicella verrucosa · all data for this species · gene families
| CDS |
| ENSNOVT00005042841 |
| Transcript |
| ENSNOVT00005042841 |
| Protein |
| ENSNOVP00005037745.1 |
| UniProt accession | Description |
|---|---|
| Q8WML3 | Histone acetyltransferase KAT6B OS=Macaca fascicularis OX=9541 GN=KAT6B PE=2 SV=1 |
| Q8BRB7 | Histone acetyltransferase KAT6B OS=Mus musculus OX=10090 GN=Kat6b PE=1 SV=3 |
| Q8WYB5 | Histone acetyltransferase KAT6B OS=Homo sapiens OX=9606 GN=KAT6B PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000832 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01853 all species → | MOZ_SAS | MOZ/SAS family | Family | Interproscan |
| PF17772 all species → | zf-MYST | MYST family zinc finger domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002717 all species → | Domain | Histone acetyltransferase domain, MYST-type | Interproscan |
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR040706 all species → | Domain | MYST, zinc finger domain | Interproscan |
| IPR050603 all species → | Family | MYST family histone acetyltransferases | Interproscan |
| IPR016181 all species → | Homologous_superfamily | Acyl-CoA N-acyltransferase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10615 all species → | HISTONE ACETYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004402 all species → | Molecular Function | histone acetyltransferase activity | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0000790 all species → | Cellular Component | chromatin | Interproscan |
| GO:0003712 all species → | Molecular Function | transcription coregulator activity | Interproscan |
| GO:0045892 all species → | Biological Process | negative regulation of DNA-templated transcription | Interproscan |
| GO:0045944 all species → | Biological Process | positive regulation of transcription by RNA polymerase II | Interproscan |
| GO:0070776 all species → | Cellular Component | MOZ/MORF histone acetyltransferase complex | Interproscan |
ENSNOVP00005037745.1.Transcript abundance of ENSNOVP00005037745.1 across 21 RNA-seq samples of Eunicella verrucosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole tissue | 21 | 2 | 0.15 | 2.67 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| ERR11252257 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 2.67 |
| ERR11252240 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.39 |
| ERR11252242 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252243 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252244 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252245 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252246 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252248 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252249 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252250 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252251 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252252 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252253 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252254 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252255 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252256 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252258 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252259 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252260 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252261 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
| ERR11252262 | whole tissue | whole tissue | polyp | not recorded | ERP146504 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (EVERR_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Eunicella verrucosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 7 | ENSNOVP00005035653.1 | 0.999892890751911 |
| Negatively correlated | 4 | ENSNOVP00005021322.1 | -0.632446489572763 |
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Eunicella verrucosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | ready | open → |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
