Gene detail

Detailed information of ENSNOVP00005038153.1 in Eunicella verrucosa

Genomic Location: not available for this species
NR annotation: XP_028395971.1, serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X1 [Dendronephthya gigantea]
Species abbreviation EVERR · all data for this species · gene families

Sequence

CDS

ENSNOVT00005043274

ACACACAGCAGTCAAGTAGAATTGAGAGTTCTCTAAGTGGAACTAAAATTGACTACCATCTGATGGATTTTTTCAGTCCCCTGCCCCACCGCTTTGTGTAAGACCCTGTTCAGAGCTTAGTTAAACCCGCGATGATATGACGACTGTCCCCCACAGCTCTGTGTAGGACCCCGTTTAGAGCTTAGTTCAAACGTGTTTGATCTACGACGTAGGTTAAAACCCGCCATGATGTGACCTGTAGTTTTTCTTTATAGATTGGAATTGTGGGTCGAACAGGATCAGGAAAATCCAGTTTGTTTCTGGTTTTATTCAAGATAGTCAATCTTCAAGGTGGTCACGTGACAATCGATGACGTAGATGTGGCAACTGTACAGTTGGAAAGATTAAGGtaaagagggggggggagggaggggcgAGGGGTGACACCAATGTTCAGGAATCTAACCATCAGAGCACTCGACACCTTGTGCCTGCAGCGTTATCAATGGGCGCCCTCTTAAACCATTTTGTTTTCCCAGCCTTCTTATATTATTTTCTGCTCACACGGTTTCCTAAACGACCACCCCcgcccacccacccacccactgtCGATATGTGAAGGAATGACGACCTGAatcataaaaaaaacaacaacaactttTCGAGGGAAGGCCTTGCGTCGTTTATTATCGCCGACCGCTCGAGATTTGAACAACCAGCGAAGTATGAATGGAGAGGAAAGACCCTGGAAGGGATTCCGTTGACGGTAGTTAGAAACTGctggaaacgtcgaatctgtttgtatcgtttaggtagtgagtagaacttttgctgctttttgatgtctTCATTTGATATCTTTTTTGTTAAAGAGAGCTAAGGTAGTGCGAGCATTGTTTGTTATCTTCGTAGCACACAGGTAAGAGGGGAAATGTGAGGATATATTGGACATCGCACTTGATaggactaaattttaatttaaagtgTTTTGGTAGTCGTCAATTTGCGCTCGAAATTCCATCTACAAAATAACGAAAGTTAACCATCAATGGAACTAACCAAAGAAGAAGACGAAATAGTATAGAGATGTTGGCCTTTACATATACCCACAGCCCTGTACCCAGAGAGACCTGTACCCCTGCACCACTGAGCTATTGGAAGCACGCAATGCGTGAGGTACGCGAGGCAGGATCTTGTTTGCTTGCAAtccaaagatggcggaattgTTCATTTGAGAATTTGAAGAATTCTTTGCCATAGATGTAAAGTGGACAATGCATGTGATATGCTTTGGTTTAGGACTACCACTGTCTGAGGGTGAGACTTTAAAAGGATGTGTCAATATATACCTTGACTGGCTTAGTTCATTGTCTTTGCAACCAAAACAAGAGGTACCACAAGAAATACTTAAGGATCCTTCACATGAATGTGGCAAAATGAATGAAACGACGTTGAAAGTCATGTTACAGTTTTTGCTATCAGTCTCAGACTTTTTACTATCACCACCCTTCGTCCCCGGGGGATTAACGGAACAGCTTTGTAGATTGTTAATTGAGGTATTGTTTGATGTTTGGCTACAGGCTTGCGTATGGTAGTAGTTTCCCATTGTATCCTCTAGACGACAAAAAACGTGAGATACGAATCCCAACAAGTCTAGATAGCAAATGTCTACTTCAAAGTTGGTTTAGGTTTTTACATATAATGGGTAACCCTGTAGATCTTTCAAATAAGGAAATTATTGGCAACACAATCAAGTTATCTTTTTGACAAAGCAGCAGGCGTGAAGTCTCATACGTCAATGCCAATGGAGAACAGCGTGCTACATTTGCTTGGATCTTGGTTGTTTGAAGCAACGCTAGCACATGTGGACATTGAAAGTGTCAAGATGAAGCTTTATAAGATATGGCAGAAATATTTCACACCTAATGATGGAAGGTAAGGAGAAAGCTAAGATTAAGGAAGCATTTTTAGCTAAGGTCACGACAGTGGTTGGTGGTGGAATCCATGTATTAGTAATGAAGAATGCTGTCCTTGTTTTAACAAAGTGCAAACTTAATCTCTCTCTTTTCTTAG

Transcript

ENSNOVT00005043274

TATTGTTATCTGACTGTAAACTCCCACCGCACTCCCTTAGGAAGAATGTCACATGACTTGTATAGGTTGGCGATTCTGATTGGCGGATATCTTAAAGCTCTCGACAATGGGCGTGTTGGATGACTGACGGACAGTTGGCACACGCTGACCTCTGACGGTGTTTTGTTGTTATTATTGTATAGCTCACTAGGTGGGTTTACTGAATGAAAAGTGTGCAACACACAGCAGTCAAGTAGAATTGAGAGTTCTCTAAGTGGAACTAAAATTGACTACCATCTGATGGATTTTTTCAGTCCCCTGCCCCACCGCTTTGTGTAAGACCCTGTTCAGAGCTTAGTTAAACCCGCGATGATATGACGACTGTCCCCCACAGCTCTGTGTAGGACCCCGTTTAGAGCTTAGTTCAAACGTGTTTGATCTACGACGTAGGTTAAAACCCGCCATGATGTGACCTGTAGTTTTTCTTTATAGATTGGAATTGTGGGTCGAACAGGATCAGGAAAATCCAGTTTGTTTCTGGTTTTATTCAAGATAGTCAATCTTCAAGGTGGTCACGTGACAATCGATGACGTAGATGTGGCAACTGTACAGTTGGAAAGATTAAGGtaaagagggggggggagggaggggcgAGGGGTGACACCAATGTTCAGGAATCTAACCATCAGAGCACTCGACACCTTGTGCCTGCAGCGTTATCAATGGGCGCCCTCTTAAACCATTTTGTTTTCCCAGCCTTCTTATATTATTTTCTGCTCACACGGTTTCCTAAACGACCACCCCcgcccacccacccacccactgtCGATATGTGAAGGAATGACGACCTGAatcataaaaaaaacaacaacaactttTCGAGGGAAGGCCTTGCGTCGTTTATTATCGCCGACCGCTCGAGATTTGAACAACCAGCGAAGTATGAATGGAGAGGAAAGACCCTGGAAGGGATTCCGTTGACGGTAGTTAGAAACTGctggaaacgtcgaatctgtttgtatcgtttaggtagtgagtagaacttttgctgctttttgatgtctTCATTTGATATCTTTTTTGTTAAAGAGAGCTAAGGTAGTGCGAGCATTGTTTGTTATCTTCGTAGCACACAGGTAAGAGGGGAAATGTGAGGATATATTGGACATCGCACTTGATaggactaaattttaatttaaagtgTTTTGGTAGTCGTCAATTTGCGCTCGAAATTCCATCTACAAAATAACGAAAGTTAACCATCAATGGAACTAACCAAAGAAGAAGACGAAATAGTATAGAGATGTTGGCCTTTACATATACCCACAGCCCTGTACCCAGAGAGACCTGTACCCCTGCACCACTGAGCTATTGGAAGCACGCAATGCGTGAGGTACGCGAGGCAGGATCTTGTTTGCTTGCAAtccaaagatggcggaattgTTCATTTGAGAATTTGAAGAATTCTTTGCCATAGATGTAAAGTGGACAATGCATGTGATATGCTTTGGTTTAGGACTACCACTGTCTGAGGGTGAGACTTTAAAAGGATGTGTCAATATATACCTTGACTGGCTTAGTTCATTGTCTTTGCAACCAAAACAAGAGGTACCACAAGAAATACTTAAGGATCCTTCACATGAATGTGGCAAAATGAATGAAACGACGTTGAAAGTCATGTTACAGTTTTTGCTATCAGTCTCAGACTTTTTACTATCACCACCCTTCGTCCCCGGGGGATTAACGGAACAGCTTTGTAGATTGTTAATTGAGGTATTGTTTGATGTTTGGCTACAGGCTTGCGTATGGTAGTAGTTTCCCATTGTATCCTCTAGACGACAAAAAACGTGAGATACGAATCCCAACAAGTCTAGATAGCAAATGTCTACTTCAAAGTTGGTTTAGGTTTTTACATATAATGGGTAACCCTGTAGATCTTTCAAATAAGGAAATTATTGGCAACACAATCAAGTTATCTTTTTGACAAAGCAGCAGGCGTGAAGTCTCATACGTCAATGCCAATGGAGAACAGCGTGCTACATTTGCTTGGATCTTGGTTGTTTGAAGCAACGCTAGCACATGTGGACATTGAAAGTGTCAAGATGAAGCTTTATAAGATATGGCAGAAATATTTCACACCTAATGATGGAAGGTAAGGAGAAAGCTAAGATTAAGGAAGCATTTTTAGCTAAGGTCACGACAGTGGTTGGTGGTGGAATCCATGTATTAGTAATGAAGAATGCTGTCCTTGTTTTAACAAAGTGCAAACTTAATCTCTCTCTTTTCTTAGTCTTGTTCAGGTCATGTTTTATCAAGCATCTTGCTGAACTCCACTGATCTCTTGAGAGTGAATTTACCTGGAGTGGATGTCGTGATTCCTCATCTTATCGCAGCCTTAGAGAAAGTTCTTGGGCATAATGAGATGACCATGGGGTAGGTAGTCTCTGTCTTTGTACAGAACAATCTATTGGTGGGCTTTAGCAATTAGCAAACAACATCAGAAATGTTCACACTTGATTGAAATTAACCAACATAACTCTATACGAATttaaatacgaattcaagctttcaaaatacaaattctCACTCTGATAACTGATAACTATCAGTTAATCACCATCTACTGTATGATTGTGAGGTAGACAACAGATTGTCTTTGTTATTTCTTTGCTTTAAATGATGTTTTTTCATCAGGTGTGATGTTCCAATGGTCCAACTACAGAGAGCAGGAATTCATTTGTTACTGTCAATGTTATGTCTTCCTTATCATTTTGGGGAATTAGCTATTGCAGGTACTATATGACCATGTatcattataaaatattataggAAGCATCTCAGTCCACCAAAAACAACTGCTAATCTTGTTTTCTATTCAGATGTTTCAGTAGACCATAAAGGGAGCAAGACGTCTGTTTCGAGTGAAAATGTGACATTTCGTTTGCTGAAATCCAGACTCATCAAGTTGTTGATTTGTGCATTAGAAAGTGAAGTTGATTCTCACAATACTCAGCTTTTACTTGGAGGTATACTATTGTGTGGCAGATATCTTAAAAATATAGGTTATTCAAGACAGGCAAACTCATCAGCAATAAGATCACAAGACAAACATAGTTAGGAGAAAGGAACAAGACTTTCATCTCAGTTAAAGCCTGACTCTTCCAACATTGAACATGACAGCATACAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P2K6	Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Mus musculus OX=10090 GN=Ppp4r3a PE=1 SV=1
Q4S6U8	Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Tetraodon nigroviridis OX=99883 GN=smek1 PE=3 SV=1
Q6IN85	Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Homo sapiens OX=9606 GN=PPP4R3A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005494 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04802 all species →	PP4R3	Phosphatase 4 regulatory subunit 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006887 all species →	Domain	Serine/threonine-protein phosphatase 4 regulatory subunit 3-like, central domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR051137 all species →	Family	Serine/threonine-protein phosphatase 4 regulatory subunit 3	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23318 all species →	ATP SYNTHASE GAMMA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0030289 all species →	Cellular Component	protein phosphatase 4 complex	Interproscan
GO:0072542 all species →	Molecular Function	protein phosphatase activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17491	SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.