Gene detail

Detailed information of ENSNOVP00005040997.1 in Eunicella verrucosa

Genomic Location: not available for this species
NR annotation: XP_028398527.1, striatin-like isoform X2 [Dendronephthya gigantea]
Species abbreviation EVERR · all data for this species · gene families

Sequence

CDS

ENSNOVT00005046491

ATCTGTAAACCAAGTACAGAGCACAGAACATCTTCTTCTGTGATACTGTCATGAACCAAGTTTTGAAGTCTATCAGGCTTCAAATTGTTTATGGCTTTAAAAACCTTTTTTGCTGCACTTTTGATCTCTTTAATAGTTGGTAGTGACCCCCAGCTGAAGCTGGCATTTATGGACCATAACGGCATCATTCAGGAACAACGTGTCCCTCACATTGAGCCAATTCAAAGATTGTATTTCCTGAGTCCCAGGACAATTCTTGCAGCAAAAAAGCCCAACTTGAACGTAATAAATTCACATGTATTTGTAACTTCACCTGAAATATTGTTGGAAAGTACGAGTCTCTGGCGCCGTCCAATAACCTCTACAGAGAAGTGTTTCTTCTGGAAGATTGGCACCTAACCTAATTATCATTCACTGTAATCattgCTGCTTCtgttttttagtattgatatatgTAATCAGAAGCATGCTTTATAAGTGTTCATGCAACAACAGTCCTATAAATAAGCTGTGGCAAAGGGGGAAATCTCTGTGGCCTCTCTGTTAGTCGCAAATTGCCAAAAAATATCTAAGATGCGGGACTGTGGTTTAGATGCATGCAGATAAACCCtctactaaactaggtataatacgaattctacgtaaactagACCCTGGTAATCTAGTAAACCCTAGTAACCTAGTGaaccttggtaatctagtaaacCCTAGTAACCTAGTAAACCGTGGTAATCTAGTAAACCCTAGTAACCTAGTAAACCCGGGTAATCTAGTAAACCCAGTAGCAATAGTTGAACGGTGGGTACTGAATCAAGTTTCAAAATGGTATTCAAAAATTAATTTGAAGTTTTAATGCCCTTCTTTACAAATTTGGATTAATATAAAAATAGCAAGGTTTAGAAGATCACCGCTACATTAAGGGACTTATTAACCAATCAGCGTTTAatctactcgattaaccaaACAGTAAAAATGATAAATCTTATCGACCAAGCATAGGCCTTTTACTATCAAGTATTAACAGTCAAAGTAGGAAAACTTACATATTACTCTTCTTCTTTAAAACACAGACCACGGCTGTTATAGCTTTGGTTGTGTAATGAAGAAAAGCCTTTTACTACCAAGTACTAACAGTCAAAGTAGGAAAACTTACATATTACTCTTCTTTAAAACACAGACCACGGCTGTTATGAGATTAATCTGTTATGAGAGTCAATCGAATATTGAATCAATCCGAATATTGCCAGAATATATCACGCTGAGCCTGGAGTATTTCCCCCCTGGTGTGATTTGTGGGCGGAAGAATCCAACACAAGTTGAAGAATTGAGATTAACAGAGATTAACAAACTTCGTAcaattcaatgttgtaaaccgtggcgaaacaacttttgtggaaagttgataaacattcacagaacaaacttcgtcaccctctctcccccagttcTCACGAgaggtatgcgaatttgttatacagggaaagtagtctcaacgagttatgtccaagattgtagttgtATTAGATTCTTAAAAATCGTATTTGGGGTTAGTGGCACCATGACAAGCGAAAAAGATATATTCTAGCCTTTTCGCTTTCGCTTTCGAAGCACTGCTATCAAGTATTAACAGTCAAAGTAGAAAAACTTACATGTTACTCTTCTTCTTTAAAACACAGACTACGACTGTTATGAGAGTCAATCAAAGTTATCACTGAGAGAAAATGAATTCGTTCTCATATCATGCTGGTTCACTGAATTTTTTTTCCGCCCCTGCACCCTATTATATCATTATCATGTTCCTGGTGGAATTGATAAACATGTAGCATAACGTCATGctatacaatcttggacataacccttgagaccaatccaacccaaattggaaagttgatgcacattcaacagtgtgaaagttaacgaATCAGAATcgtgtattttagagttaactacaattTAACTAAGAAACGGGTCCTGAAGTTTAGATAGATATCGATGCTCTAGGAGAGTCCTATGTATGTTGTAGCAAAGTCAGATTGCCAGATGGGACTGTAGAAAGATAAATTTGTAGACGTGTTATTTAAAGAACAATGATGTTGATACTTTGCATGCAATGACAGCGGCATAATTATACCATATTACAATCACAACATTGttttctcatgggctatgcacggagaagcagaacatccttcttcaacacatgcatgaaaaagaattctttatttcGACCAATTTTGACtaaaattcgcTTGGCCTGCGCCTCGGGAATTTTattaaacgaccctcatcgagcgggcggtttaacaattaatacacctcatttcatgatatcacTTAAATAATTGCTGCGAGCCGCGAGGcaagcagctacactaatcttaacgaggtcacgtgggtatatatgcgttc

Transcript

ENSNOVT00005046491

CATGtctttattcatatttttaagcCTGTTGGCAAGATCAATCTGTAAACCAAGTACAGAGCACAGAACATCTTCTTCTGTGATACTGTCATGAACCAAGTTTTGAAGTCTATCAGGCTTCAAATTGTTTATGGCTTTAAAAACCTTTTTTGCTGCACTTTTGATCTCTTTAATAGTTGGTAGTGACCCCCAGCTGAAGCTGGCATTTATGGACCATAACGGCATCATTCAGGAACAACGTGTCCCTCACATTGAGCCAATTCAAAGATTGTATTTCCTGAGTCCCAGGACAATTCTTGCAGCAAAAAAGCCCAACTTGAACGTAATAAATTCACATGTATTTGTAACTTCACCTGAAATATTGTTGGAAAGTACGAGTCTCTGGCGCCGTCCAATAACCTCTACAGAGAAGTGTTTCTTCTGGAAGATTGGCACCTAACCTAATTATCATTCACTGTAATCattgCTGCTTCtgttttttagtattgatatatgTAATCAGAAGCATGCTTTATAAGTGTTCATGCAACAACAGTCCTATAAATAAGCTGTGGCAAAGGGGGAAATCTCTGTGGCCTCTCTGTTAGTCGCAAATTGCCAAAAAATATCTAAGATGCGGGACTGTGGTTTAGATGCATGCAGATAAACCCtctactaaactaggtataatacgaattctacgtaaactagACCCTGGTAATCTAGTAAACCCTAGTAACCTAGTGaaccttggtaatctagtaaacCCTAGTAACCTAGTAAACCGTGGTAATCTAGTAAACCCTAGTAACCTAGTAAACCCGGGTAATCTAGTAAACCCAGTAGCAATAGTTGAACGGTGGGTACTGAATCAAGTTTCAAAATGGTATTCAAAAATTAATTTGAAGTTTTAATGCCCTTCTTTACAAATTTGGATTAATATAAAAATAGCAAGGTTTAGAAGATCACCGCTACATTAAGGGACTTATTAACCAATCAGCGTTTAatctactcgattaaccaaACAGTAAAAATGATAAATCTTATCGACCAAGCATAGGCCTTTTACTATCAAGTATTAACAGTCAAAGTAGGAAAACTTACATATTACTCTTCTTCTTTAAAACACAGACCACGGCTGTTATAGCTTTGGTTGTGTAATGAAGAAAAGCCTTTTACTACCAAGTACTAACAGTCAAAGTAGGAAAACTTACATATTACTCTTCTTTAAAACACAGACCACGGCTGTTATGAGATTAATCTGTTATGAGAGTCAATCGAATATTGAATCAATCCGAATATTGCCAGAATATATCACGCTGAGCCTGGAGTATTTCCCCCCTGGTGTGATTTGTGGGCGGAAGAATCCAACACAAGTTGAAGAATTGAGATTAACAGAGATTAACAAACTTCGTAcaattcaatgttgtaaaccgtggcgaaacaacttttgtggaaagttgataaacattcacagaacaaacttcgtcaccctctctcccccagttcTCACGAgaggtatgcgaatttgttatacagggaaagtagtctcaacgagttatgtccaagattgtagttgtATTAGATTCTTAAAAATCGTATTTGGGGTTAGTGGCACCATGACAAGCGAAAAAGATATATTCTAGCCTTTTCGCTTTCGCTTTCGAAGCACTGCTATCAAGTATTAACAGTCAAAGTAGAAAAACTTACATGTTACTCTTCTTCTTTAAAACACAGACTACGACTGTTATGAGAGTCAATCAAAGTTATCACTGAGAGAAAATGAATTCGTTCTCATATCATGCTGGTTCACTGAATTTTTTTTCCGCCCCTGCACCCTATTATATCATTATCATGTTCCTGGTGGAATTGATAAACATGTAGCATAACGTCATGctatacaatcttggacataacccttgagaccaatccaacccaaattggaaagttgatgcacattcaacagtgtgaaagttaacgaATCAGAATcgtgtattttagagttaactacaattTAACTAAGAAACGGGTCCTGAAGTTTAGATAGATATCGATGCTCTAGGAGAGTCCTATGTATGTTGTAGCAAAGTCAGATTGCCAGATGGGACTGTAGAAAGATAAATTTGTAGACGTGTTATTTAAAGAACAATGATGTTGATACTTTGCATGCAATGACAGCGGCATAATTATACCATATTACAATCACAACATTGttttctcatgggctatgcacggagaagcagaacatccttcttcaacacatgcatgaaaaagaattctttatttcGACCAATTTTGACtaaaattcgcTTGGCCTGCGCCTCGGGAATTTTattaaacgaccctcatcgagcgggcggtttaacaattaatacacctcatttcatgatatcacTTAAATAATTGCTGCGAGCCGCGAGGcaagcagctacactaatcttaacgaggtcacgtgggtatatatgcgttcgcaatctcgatttttttcatctcgtgggcaatgatcttcggtatatgcattgacaaccggtcagcggaaagcatcggtatacgcatagtactttttcttaaacgcacttttaatgaagatcttgctgagtgtgtaaatttatggtctattcgtggtatatgcaTTTTGAATAATCTtctgacctttcacaataatgcgCGACATAgtattacttcgagcgatcacaagtactttactaataaatagtaaatggtctccactcgcagcacttcacttgtggcagtaacttctagtaataaTAACCGCAGCCTGATTGCTGCGGAGTGAGCGATGCAGTAAATCTAATTGCTGCGGAGCCAGCGACTCGctgcgagcctgaagcgagcaaGCGAGCGAGCCTAAAGCAGACCTAATTTGTGTATTTGTGggaaaattgtaaattttggcgCGATTTTAGCTGTGTACTTTCGCGATTGAAAATTTGTACCATTGTATGCGCTTGTAAAAAGGATGTCCAATGATATGATTTCGACTTTGGCATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5D7H2	Striatin-3 OS=Bos taurus OX=9913 GN=STRN3 PE=2 SV=1
Q13033	Striatin-3 OS=Homo sapiens OX=9606 GN=STRN3 PE=1 SV=3
P58405	Striatin-3 OS=Rattus norvegicus OX=10116 GN=Strn3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005423 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF08232 all species →	Striatin	Striatin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR051488 all species →	Family	WD repeat-containing striatin	Interproscan
IPR013258 all species →	Domain	Striatin, N-terminal	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15653 all species →	STRIATIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17608	STRN1_3_4; striatin 1/3/4	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.