Gene detail

Detailed information of ENSNOVP00005042153.1 in Eunicella verrucosa

Genomic Location: :...
NR annotation: XP_028393058.1, neuronal PAS domain-containing protein 1-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSNOVT00005047765

aaatacaaagaaaaacaaagagcattgtcaAAAATTTGGCCCAATTATTTGGGAATACGGCAACCGTGGTCCCATGCATGGTCCGCTACTTTTCCGCCCAGATCAAAGAGTGCTTCGATATATTAattacaatatataatTTTTAACAATCGGAAAAGATCGATATGGGTAagcattaaaaaaaaacaagaaacgtCTCAAGATAGTGTGGAACACAGATTATTTCACGAACACGACTTTGTCGCGACAGTTTAAATCAAGTGAAAACTGGGCAAGTAGAATAAGCATGCATATGAGaataaactgtttaaaagataacctgatatcgagaaataatgctagatagaccgagcgtataaactcaaaataaaaatactaaaaggcgctacttacattcagctattcctatgcgaaaaaaggatcggatcggactggactttttccatcttgtattatccacactgccGGCCAAAATAGGttgaaaattggtaccgaaagcccatgcgcgggttcaattttgttccgatccggaccgatccaatgcttattttcctgagtggaaatcggccttCCTGTAAAACAGCCAAAAAGTCTTTGTGCCCTGCTACCATGCTTCTCAGAAAGTGAATTAGTTGTATATATGATTATTACCTTGATCTGTTTTTGTGGCAGGTTTCCAACGTTCCTAAAATATCACTATATATTGGCTGGTTGGCTGAAAATACATATTTCTTACCTTGGGTGGCTTGAACGGATATTCAGCTGGGAAGGTTATTTCAATTCTAAAAGCACCTTTATTATATGGGGCAGATTCCTATaatgatctgaCAACAATTCTAAGCCGCTTCCTAGACAATATGTTATCATAAtgctagttaataaaaaatgtcatcgctagacgctacaacttaatacttttcacttcctgttatatatatcacctaacacacatacgcttgtaattaactcattcctatttacccgtcgaagactacagttaggtagtcgaaatccaataattgataaataattgtaatttgtaagTAAGATATGATTTGTTTATGTTATATTCAGACGAAATTTAAGGCTGGAACTTTGTTGATGTTTGAacgtagccaatcagaatctacCAAGTTGAACTAGGACCAATCAGAAGCAACCACTCAGATCTGAGCAGGATTGTGTGCTGAGGGTTGACAAGCATGCCACAAATTTTCACAGACTAGCTGTGTCATAAGTGCACCATAATACAGTCTGAAACATAGGCTTGGCAAGGGAAAGCAAATAACAAACAAAGTTTATTTACTTATGGGCTCATAAACGGATTACAGCACTATCATATCAAGGTCTGGTCAAACAAGGATGAAAGTTGAGAAGCAATAGTTTGTgtgagagttctctcaactctcatgcaccgGTCAAATggggtgagagttgatgagagttgaccagtACGGATGTTATCCAGTTACTCAaacaaatttttgtaaatattatgttTTGTTAAATGCACTTGATAACTGGTCCCCTTTGCACCATTTTGCTGTATCATGGAAACAGCTTAAAACGAATTTTGACAACTTACGGGCACAATAAGTCCTTGCCAATTTAATATGTTTGTTTCATCTACTTTAATGTCACGAAACAATTTCATACCAGATTTTCTTATATCCGCCAGTTCctgaaaaaatacaacacaTTTCGTACACAAATCAAGATTGTATTTCGCTGAAGTCGCGATTTCCTTTCAGTATTTCTTGGCCAGTACCTAGAGCTTGCAAACGcggtaaaacaaataattaacaAGGTTTAAACGGCTAAAGACGTTTGATAAGTTAGCGGTGCCAAAATACTTACAACCAAATATGTTTCAATCGATGAACGAGTTTTACagtgcaaaaatacaatagctTTTCTTCACAAAGCGAAACTATGGCTAGGAAATGGGTTGTGTTTGGCGCCGAAATACTCGACTAAAAACGGAGTTTTACCGGTAGAAATGAACTCAAAAGCCTCTTTAGGCTTCGCAAAATGTACAGCAAAGCTTTGCGTAAAAATAAAGCAGTAAAAAGCAGTTTTTCTTACCTTAGTCAACCTTCGTGTGGCAGCCATGCTGAATTTCTACCTGTGAAGCAATCGGCGCGGTCGAGGGGACTGAGCACGAAATGAGTTTCTTCTTTCCCATAAACCTCTTTGCCCTTCAGAGTTCCTGAAATTTGAAATTCCAATCAGTGGAATTCCTCTTAGCTTATTGAAAATTCCTGGAACGACTGACAGTCATCAATGCAATGGCTTTTAGGACCTTTCAGGCTTGTACACATTATTGTTCATGCCGAGCAATCTACCCATAATTtgttcaaaatgcaagctgcaACTCAATTTCACCCGTGATTTTCACATAACGTGATTTCACACGTGATTGAATGGTGATTTAacatatattagtataattacataggtgattatttaaaattcctaatgctgattggctgcgcttgaggtgactATTACACAacaatcacctaatgcgtttttcagaatAGCT

Protein

Uniprot

Uniprot term	Description
Q9QZQ0	Neuronal PAS domain-containing protein 3 OS=Mus musculus OX=10090 GN=Npas3 PE=1 SV=1
Q8IXF0	Neuronal PAS domain-containing protein 3 OS=Homo sapiens OX=9606 GN=NPAS3 PE=1 SV=1
Q98SW2	Hypoxia-inducible factor 1-alpha OS=Oncorhynchus mykiss OX=8022 GN=hif1a PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08447	PAS_3	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013655	Domain	PAS fold-3	Interproscan
IPR001610	Repeat	PAC motif	Interproscan
IPR000014	Domain	PAS domain	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23043	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan