Gene detail

Detailed information of ENSNOVP00005043993.1 in Eunicella verrucosa

Genomic Location: not available for this species
NR annotation: CAB3990615.1, AP-4 complex subunit mu-like [Paramuricea clavata]
Species abbreviation EVERR · all data for this species · gene families

Sequence

CDS

Transcript

ENSNOVT00005049880

TAACGTTCCTTTAACACAAGAACTAATGGCTGTTGGTCAAAAAATGACATCAGACGACATAGCAGTGGAGAACATGCTAGCACCATCATGCACGCAGCTTCCCCAAGTGTCCACAAATAATTCACTGTTGAATCCGGCACAACCATCTGAAGCAATCAATCAAACTGTTCAACCTATTTTAGCAACCCACATGCAAGGTCACTCGGCTTTTGTAAGCTCTGTGAATGAATCACGCAATAACCTCACCTCTCACGTGAACAGAGGCAACGACAAGACCACGTGGTCGACAGCAACACAAGCAATGATTCATCTTCTATAAATAACCCGATAGAAAATACTTCTATTAAAGAGCGACCATTTAATCTTAttgaattGCACAAGATGGTCAAACGGCATTGCTGGAAAATATCATGGGTTTCACTGAAACTAATTCAGAGTCATTGACGTTGCCTCTGACGCCAAAAGGTTCCTGGATGTCTTTCGGTAGAGagagagagaacagtttagtttaggtttcctccggtagtaacactggatcaataagaggtgattcttactggacctctaataaagttagtttagtttGTAAATTTTGTACTTTTGTAAATAAAGTCTTTACAACGTCAAAAACATCTAGTATTGTCAAAAAATCACTGTtgaataatttttataCGATGGAGTTTATTCTACTCTAAGGTATGGCCTTATCCTGAAAAAGAAACCAGAAAAAGAAACAGATGAGACAGGTTTGGAAGAAAATAGTCCATCTCCAGTGAGAAAGTTTGTACAGCACTACTGTCCAACCGAGATATCGAGCATTAAAGGCCATTTCTCATTGCAGTATTTCtcagcaaatatttttattatgagGTGAAACAAAGCAACAAACATTTTATTTAGACACAACTTGAAATAAATAAAGTCCTTGATGAAGATCCTACAAGGAATTCAGTGCACCTCTAGTTCAAATTAGCTAATACTAATATTCTAAATTTTGCTGTAAACGTCCATCATTACAAGTGTTTAATACCAATGAGGAACGCCGGACTGAACGACAAGTTCAGAAAGAACGAGAAGCTGAAGGAGCCTTTCTCACAGCCAAAAGgagtattttgtttttatccttaATGTGTCCAAAATATTACGCTCCGGTTTAAGCCTGGTTTTTAGTATTTGACAGTtggcgagctccattgtcggtgtgcactgatgagtaaaatcctttgtatatctgaaatcATTAcaagtcctaaacaaattaTTCGTTTAGCTGTTTTTTCGTTTTAAACGCAATAAATGAAAAGACAGAAGTACAGACGATGAACAGGATAAAGGAAAAACGTTTTCTCGTAacgaaaatgaacaaaataaacCTCGCAGAGAAGGTGACAAAACACGCGAAAAATCTAGAAGAGAACGATAGCGCGCGGCACGAAAAAACGCAACAAGAAGCGGAAAAAACGGAACAAGAAGCGGAAAGAACGGAACAAGAAACGGAAAGAACGGAACAAGAAACGGAAAAAGATGAAGAACACGAAGCCAGGAAACGCGGATCAAATGAGGAAATAAGTTCAGatgaaattttacaaaattcgGAAAATACTGAAATAAAAATGACCGAATCAAAATCTCGAAGAAAGCAGAGAGAAGAGACGCCTACAGTGaataaatttgcaaaacataCATCTAACGAGACGGTCATGTCAGCTAGGGAGAGATATTTAGCTCGTAAAAAAACCAGAGTAGTTGCCATACAAAGTGGATCAGACGACGAGAATTAACACAGACCTAAAACGGTGTCTTATAAGGCTGTTGCTGTAGGTCCTAATACATCCTAGTGACATCCTAAACTTATCCTTTGTATCCCTCGGAAATTGCCGAATTTTTAGCTACTTTGTACTTGTAAATAATTTGTATACTAACCTGAATAAATAGAAGAAGAGAAGCTTCCTGTGTTGAAGTAAATCCTATTTTACAAATTCCACTTTTACaaataatattatgaatttgTAATTTGAAGCATGCTAATTAATTATTCCTAGCAATCGCATTTAATTCCCAAGGGAGTTACACCAATAGATGCTTATTAGCAGTAGCCAATCATGAAAGCTTGTGTAGGCTAAACCAATCAGAGCTTGAATACGAAAATGCATGCAAATTCGTGgcaagtttgaaaatttctgCTCGGGGCGCCATTTTGACTTGAAGTTGACAGCAAAATACATATTAAAGTTGATAAAAACTTCGCTTTTGTGGAAATTTTTCGAACTAAAATGGTTATGCCGTGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9SB50	AP-4 complex subunit mu OS=Arabidopsis thaliana OX=3702 GN=AP4M PE=2 SV=1
Q9JKC7	AP-4 complex subunit mu-1 OS=Mus musculus OX=10090 GN=Ap4m1 PE=1 SV=1
O00189	AP-4 complex subunit mu-1 OS=Homo sapiens OX=9606 GN=AP4M1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006002 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00928 all species →	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan
PF01217 all species →	Clat_adaptor_s	Clathrin adaptor complex small chain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028565 all species →	Domain	Mu homology domain	Interproscan
IPR011012 all species →	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR001392 all species →	Family	Clathrin adaptor, mu subunit	Interproscan
IPR036168 all species →	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR050431 all species →	Family	Adaptor complexes medium subunit	Interproscan
IPR022775 all species →	Domain	AP complex, mu/sigma subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10529 all species →	AP COMPLEX SUBUNIT MU	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030131 all species →	Cellular Component	clathrin adaptor complex	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0006605 all species →	Biological Process	protein targeting	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0090160 all species →	Biological Process	Golgi to lysosome transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12402	AP4M1; AP-4 complex subunit mu-1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.