Gene detail

Detailed information of ENSNQRP00000000088.1 in Porites lobata

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families

Sequence

CDS

ENSNQRT00000000133

atggcggaggaGGAGGCATCACATCCAAAAGTTCTCATTTTTACTGCACCAATTTTATGCTTTAAAGAAAAAGCTCCAAACCTCACACGTAAAGGTAGCAAGATCTGTTGGAGTAAAACAACTTTAAAACAAAGTGGGAAAGCATTTGTGCGGTGTGAGCAGCAATTTTCCAGCAACAAAGATGATGACCTCACTGAAGAGAGTGACCTAAGGCTTGAATATGAACCATTAGCAGTTCAGGAGTCTGTCTGTTTATACCTGGAaagtgaatttaaaaacactgaaCACACTTCACAGCCAACTGAGTCATCTTCATTTGGGTTTGAAACAGGGTGTCATGTAGCTCACAGTGAGAATGTTGATGCTGGAAATCTGCAGAGAGAGTTTGAAGACATAAGATGTGCAAGTCAAAGACTCCTCATTGAAAATGGTGCACGAAGTTCAAGCATGTCTAGTGATGAGGATAAAAAAGCGATCAAAAGGAAGTTTGATGCTCTTGGCGGTTTTGATTGTGATACTGATACACATCAGTTGACAATGGAGGATGTTTACACCCAAGAAAAATTCCCCTCTTCTTCATCAAGTGAGACATGTAATCCAATTCACAAAGAAGATACCACAACAGAGACTACTGCAGAAGTGAGCTCTAGTGTCAAACAAAGTGTTAACCCTGCTCGGGAACTTGGAAATAATGCTGTACCAAAAGTTTGTAACACATTAACTGCATTCAAAGACTGTAATGTAGAAAATGCTCTGGTTAACATTCTGTTTGTTGTTATCCAAGTGAATGACACCCGCGAAGTGCAAATAAAATCAGGCGCCAGTGCTGGAACATTTGTAGCTGTGTCTTCAGTTCTAGTTGCTGATGAATCAAAGCCATGTTTCAAACTTACACTTTGGAGAGAAGCCTCCAGGTGGACTGAAAAGATAATGCCTGGGGATTTTGCTGTTGCTACGTCAATTAAGATTGGAAAATGGCGCAGTGAATTTGTTGGGCAGACAACTTTTAACTCAGGTTTCTATAATCTGCATCGACCGAGAAGACTTCTATCCAACATTTGCCGAAAGTTAGTTTCACAGGAGAGATTTAATGCCCTTGCCAAATGGGTTAGAACAGAGCACCCTTACTTCTTTGGAGCTTCTACTCTAAAGAGGAAAGTTGAATTTACTGAAATTGCTCAGATGCTTGACAACACCTTGGTTCACTTCAGAGCTAAACTGATAAGTATTCATGACTCCTCCCCTTCATCAAGTACCTATCATTTTGGTGGTCAACAGCTGACCAAAATTATAGCAGtcTTAGAAGAGCGACCGGGCGAAAAGATACAACTATTTCTATGGGGCAGACAAGCGGCTTGGATGAACCAACTAAGAGAGGGAATGGGGAGAGTCTGGGAGTTCCATTACCTCACGGCCAAGTACAACACTGATGCTGGATGCGTCTCACTGCACTCGAACCCGAGATCAACAAAGGTGAAACTTCCGGTGAACGACAAAAACGCCTCCTCTCTTATGTTACGTTTTGATGAAACTGCCAAGCCAACAAAAACATTTGCGAACGTACACGATCTGCTGGAATCCAAATTTACTGGCTTAGCAGAACTGGAAGCGGAAATAACTTCGTTGCAGTTTCACTGTAAGGATGAAGTCGTTGTTGTAGACGAAACTGTGCCCTCGACAGAGACACTGAAGAAGGCGATTGACAAATTAGTGTTCATCGGTTGCGGCTCGTGCTCTCGGGCTCTTGTGCAAGATAAAAACGGTGTTTACTGTCAATGTTCACATTGTGTTGTGGCAAATCCCAGTTACCAGTACACTACAAAATATTACTACAAGCCGCTGACCTTGGTCCTTGGCGACTCCCGTACGTCCTTACAAGTGGAAGCATTCGGTTGCGTCATTTCGCGCCTTTTTTATgactttcccgccaaaatgttAGTCCAATCAGCGGCGAAAGGGTTATCAGATGACAAGAGTTTTGTCGATAGTTTTGTTACTTTCATTAAAGCTCTTGTAAAGAACCCTAAATGCAAGGTTACAGTTGCCTGTCACCTGACTGTAGATGAAAATAGCTTCATTGAGGATAGAACTTTCACTCTTCAGCAAATTGAGTTAATGCGATAA

Transcript

ENSNQRT00000000133

ccaaattcaaaatggcggaggaGGAGGCATCACATCCAAAAGTTCTCATTTTTACTGCACCAATTTTATGCTTTAAAGAAAAAGCTCCAAACCTCACACGTAAAGGTAGCAAGATCTGTTGGAGTAAAACAACTTTAAAACAAAGTGGGAAAGCATTTGTGCGGTGTGAGCAGCAATTTTCCAGCAACAAAGATGATGACCTCACTGAAGAGAGTGACCTAAGGCTTGAATATGAACCATTAGCAGTTCAGGAGTCTGTCTGTTTATACCTGGAaagtgaatttaaaaacactgaaCACACTTCACAGCCAACTGAGTCATCTTCATTTGGGTTTGAAACAGGGTGTCATGTAGCTCACAGTGAGAATGTTGATGCTGGAAATCTGCAGAGAGAGTTTGAAGACATAAGATGTGCAAGTCAAAGACTCCTCATTGAAAATGGTGCACGAAGTTCAAGCATGTCTAGTGATGAGGATAAAAAAGCGATCAAAAGGAAGTTTGATGCTCTTGGCGGTTTTGATTGTGATACTGATACACATCAGTTGACAATGGAGGATGTTTACACCCAAGAAAAATTCCCCTCTTCTTCATCAAGTGAGACATGTAATCCAATTCACAAAGAAGATACCACAACAGAGACTACTGCAGAAGTGAGCTCTAGTGTCAAACAAAGTGTTAACCCTGCTCGGGAACTTGGAAATAATGCTGTACCAAAAGTTTGTAACACATTAACTGCATTCAAAGACTGTAATGTAGAAAATGCTCTGGTTAACATTCTGTTTGTTGTTATCCAAGTGAATGACACCCGCGAAGTGCAAATAAAATCAGGCGCCAGTGCTGGAACATTTGTAGCTGTGTCTTCAGTTCTAGTTGCTGATGAATCAAAGCCATGTTTCAAACTTACACTTTGGAGAGAAGCCTCCAGGTGGACTGAAAAGATAATGCCTGGGGATTTTGCTGTTGCTACGTCAATTAAGATTGGAAAATGGCGCAGTGAATTTGTTGGGCAGACAACTTTTAACTCAGGTTTCTATAATCTGCATCGACCGAGAAGACTTCTATCCAACATTTGCCGAAAGTTAGTTTCACAGGAGAGATTTAATGCCCTTGCCAAATGGGTTAGAACAGAGCACCCTTACTTCTTTGGAGCTTCTACTCTAAAGAGGAAAGTTGAATTTACTGAAATTGCTCAGATGCTTGACAACACCTTGGTTCACTTCAGAGCTAAACTGATAAGTATTCATGACTCCTCCCCTTCATCAAGTACCTATCATTTTGGTGGTCAACAGCTGACCAAAATTATAGCAGtcTTAGAAGAGCGACCGGGCGAAAAGATACAACTATTTCTATGGGGCAGACAAGCGGCTTGGATGAACCAACTAAGAGAGGGAATGGGGAGAGTCTGGGAGTTCCATTACCTCACGGCCAAGTACAACACTGATGCTGGATGCGTCTCACTGCACTCGAACCCGAGATCAACAAAGGTGAAACTTCCGGTGAACGACAAAAACGCCTCCTCTCTTATGTTACGTTTTGATGAAACTGCCAAGCCAACAAAAACATTTGCGAACGTACACGATCTGCTGGAATCCAAATTTACTGGCTTAGCAGAACTGGAAGCGGAAATAACTTCGTTGCAGTTTCACTGTAAGGATGAAGTCGTTGTTGTAGACGAAACTGTGCCCTCGACAGAGACACTGAAGAAGGCGATTGACAAATTAGTGTTCATCGGTTGCGGCTCGTGCTCTCGGGCTCTTGTGCAAGATAAAAACGGTGTTTACTGTCAATGTTCACATTGTGTTGTGGCAAATCCCAGTTACCAGTACACTACAAAATATTACTACAAGCCGCTGACCTTGGTCCTTGGCGACTCCCGTACGTCCTTACAAGTGGAAGCATTCGGTTGCGTCATTTCGCGCCTTTTTTATgactttcccgccaaaatgttAGTCCAATCAGCGGCGAAAGGGTTATCAGATGACAAGAGTTTTGTCGATAGTTTTGTTACTTTCATTAAAGCTCTTGTAAAGAACCCTAAATGCAAGGTTACAGTTGCCTGTCACCTGACTGTAGATGAAAATAGCTTCATTGAGGATAGAACTTTCACTCTTCAGCAAATTGAGTTAATGCGATAAGGATttggaaaataaattttcacgTCAATTCATTCAGtcttgaaaatattattttgtccAGAAGCTACCAACTCGGGCGGTTTGTTGCCGCACTGCTCgccaaaaaactaaaattccagcaaatttcgagcaaaaactaaaattccagttaaaagagaaaacagaCTGGACCAAtcacaaaggaaaaaatgttgGCTCGGCAAAATTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15793 all species →	SHLD2_C	Shieldin complex subunit 2, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR029715 all species →	Family	Shieldin complex subunit 2	Interproscan
IPR031589 all species →	Domain	Shieldin complex subunit 2, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14495 all species →	SHIELDIN COMPLEX SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010569 all species →	Biological Process	regulation of double-strand break repair via homologous recombination	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26129	SHLD2; shieldin complex subunit 2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.