Detailed information of ENSNQRP00000002028.1 in Porites lobata

Genomic Location: Porites_lobata_contig_5:5027507...5033482
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001305 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00520
all species →
Ion_transIon transport proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005821
all species →
DomainIon transport domainInterproscan
IPR043203
all species →
FamilyVoltage-gated cation channel calcium and sodiumInterproscan
IPR027359
all species →
Homologous_superfamilyVoltage-dependent channel domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10037
all species →
VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUMInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005216
all species →
Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811
all species →
Biological Processmonoatomic ion transportInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0055085
all species →
Biological Processtransmembrane transportInterproscan
GO:0001518
all species →
Cellular Componentvoltage-gated sodium channel complexInterproscan
GO:0005248
all species →
Molecular Functionvoltage-gated sodium channel activityInterproscan
GO:0005261
all species →
Molecular Functionmonoatomic cation channel activityInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0008332
all species →
Molecular Functionlow voltage-gated calcium channel activityInterproscan
GO:0043005
all species →
Cellular Componentneuron projectionInterproscan
GO:0070509
all species →
Biological Processcalcium ion importInterproscan
GO:0086010
all species →
Biological Processmembrane depolarization during action potentialInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSNQRP00000002028.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites lobata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites lobata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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