Genomic Location: Porites_lobata_contig_5:3977458...3982905
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families
| CDS |
| ENSNQRT00000004628 |
| Transcript |
| ENSNQRT00000004628 |
| Protein |
| ENSNQRP00000003464.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006893 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08292 all species → | RNA_pol_Rbc25 | RNA polymerase III subunit Rpc25 | Domain | Interproscan |
| PF03876 all species → | SHS2_Rpb7-N | SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013238 all species → | Domain | RNA polymerase III, subunit Rpc25 | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR004519 all species → | Family | DNA-directed RNA polymerase, subunit E/RPC8 | Interproscan |
| IPR036898 all species → | Homologous_superfamily | RNA polymerase Rpb7-like, N-terminal domain superfamily | Interproscan |
| IPR005576 all species → | Domain | RNA polymerase Rpb7-like , N-terminal | Interproscan |
| IPR045113 all species → | Family | RNA polymerase subunit Rpb7-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12709 all species → | DNA-DIRECTED RNA POLYMERASE II, III | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003899 all species → | Molecular Function | DNA-directed 5'-3' RNA polymerase activity | Interproscan |
| GO:0006351 all species → | Biological Process | DNA-templated transcription | Interproscan |
| GO:0005666 all species → | Cellular Component | RNA polymerase III complex | Interproscan |
| GO:0006352 all species → | Biological Process | DNA-templated transcription initiation | Interproscan |
| GO:0006384 all species → | Biological Process | transcription initiation at RNA polymerase III promoter | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03022 | RPC8, POLR3H; DNA-directed RNA polymerase III subunit RPC8 | - | Transcription machinery | ko03021 | deepkoala |
Genes whose expression across the transcriptome samples of Porites lobata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Porites lobata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
