Gene detail

Detailed information of ENSNQRP00000004796.1 in Porites lobata

Genomic Location: Porites_lobata_contig_5:6127092...6134671
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSNQRT00000006073

ATggctttacgggcccgaaaagtttcctgctctttcgagaaacgggcccctaCAGTGTGTCCTGATGTTGATCCCAAGGATGTTGCCAAGGATCTAGTTATCACTGGAAGTGCTACACGAACAATCAACAGGATTTTAGATGGACAGGTATGTGTAAACAAACGCGCTGCTTACATTTTCATGCTTCGACCATATAAAGTCACTTCACCTCATTCCAAGAATTTATCAGTGTCTGCTAATAAAGTCTTGCCAGTTATAAATCATGATGATAACTCTAGTGACACTGAAAAATATACCGAtacagatgatgatgatgatgatattacAATACTTAATGAAGAGTCAAAAAGTTTGTTCAGTGCTCTTAAGAAGAGAATGCACAGTACAAAACAATCAGAACACAAgtatgcaaaacaaacaaaaaccctGGACTTGCACAAGGACAACAGAATTATTAATAACAATTATGAATTGGAGAGCAGTCCACAGAAACGACCTATAAATACTAAGAGGACAAGCTCCATTGTTGATCTTTCATTCTCAGATGATGACAGTAGCTTTGAAAAGATTAGCCATAAAGAGCACTCACCTCTTGCAATGAATAGAACTGCAAATTGTGCTATGAAAGTACCAACTGGAGCCAGTCATAGAATCAAGAGTGTTAATAAACTTAGAAATGGCTCAAAACAGGGGACAAATGGTTTGGATTCACGTCTGCATGGATCTGACAATGACACTGATAGCTGTGAAGGAAGTGATGGGTTTCCTTGCATTCTAGCATCATCCAGGCTTCTCTATAGTGAAACAACCAGCAGATCTGCCACAGCAGGTCTCACCTCAGGAAGCTGTTTGGACTCTCAAGATAGTTCTGGAATaccttttaaaagaaagaagagatCAAAAGAGGAAATAATGAGTCAGAGAAATGAAGCTTTGCGAAAGAAACAAGCCAAGGAACTGGAGCGACAAGCAAAGAAGGAAGctaaagagagagaaaaacaggaaaggCAGCAAGCTAAAGAACTAATGAAAACACAGAAGGAAAGGGAAAAGCTTTTGAAGAAGGCAGACAGTATGAATAAGAAAATGAACAATCGCTTGGACAACTGCATCCAGCAAATAAAGGTGTACATTGATCCTGAAATTGTAAATGGAGGCCAGCTGCCTGAAGAAAGCCTTCTCCTTCAAAAGCTAGAGTCATTTGGGGCACGTCACAAGGTAGAATCACAGCTGATTCCTGCTAGTATCACTTGGAAGAGAGCTGTGGTGGAGCATGATGTAGCAGACACACTTCAGATCTCAACCAAGACTAGTTTTGTAGATGAGAAGCATCTTCTTGTTCGTCTGACTGCAGACAAGTTTGTTGAGATGGTTTTCCACTTTCGCGAGGAGATGCAAAATCCTGCGATATCTGTAATCGCAGATGACGAAACTCTGAGAGCATTTTGTGAAAGAACTCTTGTGATTTATCCAGGAAGAGTGGTTACACTGGTTATCGTGGgacttgaaaaatatttcagagATGTCAAACTCACTCAAACAAGACAATTTCGAAGTGCAGTTCAGGGTTCTAGTTCCTCAGATAATGAAAAACCATCGAGCAGTAAAGGACGAAAGAAAGTTAACAAGAAGTCTGGACCGAGTGTTATGGTGTCACGTGTTGATGTTGAGGAGGCAATGGTGGACCTGCAGCTCAGGCAGCCAAACTGCCGAGTGCGCATGTGTGAAACAGAGGAAGAATTTGCTGAGCTGTTGGCCATGTTTACTAAAGCCGTTGGCGAGGCACCTTTTAAGAAGAAGCAGCCAGAGACGTTCAGTTTCTGTGTTGAAGGAGGAGAAAAAGCATCCGTGAAGGTGTCAAAGGAGGGTGACGGTTTAAAGAAAGTATGGCTGCAACAGTTTCAGCAGTTCAGAAACGTCTCCGCAGATATGGCTGCTGCGATTGTCGCCGTTTATCCAACACCTCAAAGTCTACTACAGgcttATAGAAGATGCGACAGTAGAGTAGAGTCGACCAAACTTCTTCAGGATATATTGGTTCGCCGCGGAGCTGGAGTGTTAGCCAACAGTAGGAGAATTGGACCCGAGCTTTCTCGGAGAGTTTTTTTGCTATTAACCAGTGAAGATGGTGACTTACCTGTGAAGTGA

Transcript

ENSNQRT00000006073

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004649 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02732 all species →	ERCC4	ERCC4 domain	Domain	Interproscan
PF21292 all species →	EME1-MUS81_C	EME1/MUS81, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047524 all species →	Domain	Crossover junction endonuclease EME1, XPF-like nuclease domain, plants/arthropods	Interproscan
IPR006166 all species →	Domain	ERCC4 domain	Interproscan
IPR033310 all species →	Family	Mms4/EME1/EME2	Interproscan
IPR042530 all species →	Homologous_superfamily	EME1/EME2, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21077 all species →	EME1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0008821 all species →	Molecular Function	crossover junction DNA endonuclease activity	Interproscan
GO:0031297 all species →	Biological Process	replication fork processing	Interproscan
GO:0031573 all species →	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0048476 all species →	Cellular Component	Holliday junction resolvase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10882	EME1, MMS4; crossover junction endonuclease EME1	EC:3.1.22.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites lobata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites lobata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →