Detailed information of ENSNQRP00000008712.1 in Porites lobata

Genomic Location: Porites_lobata_contig_10:2798219...2808343
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005903 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07975
all species →
C1_4TFIIH C1-like domainDomainInterproscan
PF04056
all species →
Ssl1Ssl1-likeFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013087
all species →
DomainZinc finger C2H2-typeInterproscan
IPR004595
all species →
DomainTFIIH C1-like domainInterproscan
IPR013083
all species →
Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR046349
all species →
Homologous_superfamilyC1-like domain superfamilyInterproscan
IPR002035
all species →
Domainvon Willebrand factor, type AInterproscan
IPR001841
all species →
DomainZinc finger, RING-typeInterproscan
IPR012170
all species →
FamilyTFIIH subunit Ssl1/p44Interproscan
IPR036465
all species →
Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR007198
all species →
DomainSsl1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12695
all species →
GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006281
all species →
Biological ProcessDNA repairInterproscan
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan
GO:0005675
all species →
Cellular Componenttranscription factor TFIIH holo complexInterproscan
GO:0006289
all species →
Biological Processnucleotide-excision repairInterproscan
GO:0006357
all species →
Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0000439
all species →
Cellular Componenttranscription factor TFIIH core complexInterproscan
GO:0006351
all species →
Biological ProcessDNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03142TFIIH2, GTF2H2, SSL1; transcription initiation factor TFIIH subunit 2-DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites lobata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites lobata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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