Gene detail

Detailed information of ENSNQRP00000010541.1 in Porites lobata

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation PLOBA · all data for this species · gene families

Sequence

CDS

ENSNQRT00000013052

ATGGCGGGTGCTGCGGTCAAAAGAAAACCCGATTCAAACGTTCCTCCAGAGGAAAGTGACCTGCTGAAAATAACTCCATTGGGTTCTGGGCAAGAGGTTGGCCGATCATGTCATATCTTGGAGTTCAAAGGAAAGAAAGTCATGTTGGACTGCGGCATTCATCCTGGAATGTCTGGAATGGAATCACTTCCTTTTCTTGATGAAATTGACACAGCAGAAATTGACCTCCTTCTTGTCAGTCAtttccACTTAGATCATTGTGGTGCTCTTCCTTGGTTTCTAGAAAAGaCTACTTTTAAAGGAAGAGTATTTATGACACATGCAACCAAAGCAATATACAGATGGTTGCTCTCAGATTATGTCAAAGTTAGTAACATTGCAACAGAAGATATGCTTTACACTGAATCAGACCTGGAAAAAAGTATGGACAAGATTGAAACAATTCATTTTCACCAGGAGAAAGAAGTCAATGGAATAAAATTCTGGTGTTACCATGCAGGTCATGTTCTTGGTGCATCCATGTTCATGATTGAAATTGCCGGAGTAAAGATTCTTTACACTGGTGATTTTTCACGTCAGGAAGATCGTCATCTTATGGCTGCTGAGATTCCCAGTATTTCACCAGATGTCCTTATCATTGAGTCAACATATGGTACTCATATTCATGAAAAACGTGAAGATAGAGAAAACAGGTTTACAAGTACTGTTCATGACATTGTTAATCGTGGTGGACGATGTCTAATTCCTGTATTTGCTCTTGGTCGAGCCCAAGAACTACTTCTTATTCTGGATGAGTACTGGCAGAATCACCCAGAGCTACATGATGTTCCAATCTACTATGCTTCACAACTGGCAAAGAAATGCATGTCAGtGTTCCAGACTTATGTGAATGCCATGaatgataaaataaagaaacagATTGCCATTTCCAATCCGTTTGTTTTCAAACACATATCAAATCTAAAGGGAATTGACCAGTTTGATGATATTGGTCCGTCTGTGGTGATGGCAAGTCCAGGAATGATGCAGAGCGGTTTGTCACGCGAGCTGTTTGAGCAGTGGTGTACTGATCGTAGAAATGGTGTAATCATCGCCGGCTATTGTGTGGAGGGAACACTGGCGAAGACCCTGATGTCTGAACCTGAAGAGATTGCTACCATGACGGGACAGAAGATTCCTCGGAAGTGCTCCATCGATTACATTTCATTCTCAGCTCACACTGATTTTGAACAGACCAGTGAATTCATTCGAATTCTTAAGCCTCCTCACATTGTACTTGTACACGGTGAGCAAAATGAGATGGGCCGACTCAAGGCTGCTCTTATCCGAGAGTACGAGGACAACCCGGACGCGAGTGTAGTGGTTCATAACCCCCCTAACACTCAAAGTGTGGAGCTTTACTTCAGGGGGGAGAAGATGGCAAAGGTGATGGGAAGTTTAGCGGCGGAAAAGCCTGAACATGGAAAACCTTTGTCTGGGATTCTGATCAAGCGTGGCTTTAACTATCATTTGATTGGGCCAGATGATTTACAAAATTACACCGAACTTTCAACAAGTGTACTTACTCAGaAGCAGACAGTGGCTTTTCATGGCGCTTTCTCTCTGCTTCTTCAATGCTTGGAGAACTTGGCTGGCGAAGTGGAGCAGCTCACGCTTCAAGGAGGAAAACTAGCGCTGAAAGTTTTTAAGGCCATCACTATAATCCAAGAGAAAAGGAGCGTTACTGTGGAGTGGGTGGCTAATCCCGTAAATGACATGTACGCTGATGCTGTTCTAGCAGTGATTTTACAAGTTGAATCCAATCCTACTGCAGCTCAAGttgcTCGCTCCAAGAAGTCTGACTTGAGCAAGTTTCCTGAAAAACTGGTGACACTTTTAAGGGGAACTTATGGTAACGAAGCAGTAACTCGAACCACAAAAGGTGACCAGATATCCGTGCGACTGGACGGACAAACAGCTGTTATCAACCTTGATACTCTGGAAGTGGATTGCCTTGATGAAAGTTTACACAGCCATGTTTCATCTGCAGTGAAGCGTCTTCATAATGCCATGGCTCCATGTCACCCTTGA

Transcript

ENSNQRT00000013052

CAAACGGGAAGAGACATTTCGTGAGCATTACACAGCCAACCTAACCGCGGGCTCGGTTAGAAGATGTCAAATTAAAAATGGCGGGTGCTGCGGTCAAAAGAAAACCCGATTCAAACGTTCCTCCAGAGGAAAGTGACCTGCTGAAAATAACTCCATTGGGTTCTGGGCAAGAGGTTGGCCGATCATGTCATATCTTGGAGTTCAAAGGAAAGAAAGTCATGTTGGACTGCGGCATTCATCCTGGAATGTCTGGAATGGAATCACTTCCTTTTCTTGATGAAATTGACACAGCAGAAATTGACCTCCTTCTTGTCAGTCAtttccACTTAGATCATTGTGGTGCTCTTCCTTGGTTTCTAGAAAAGaCTACTTTTAAAGGAAGAGTATTTATGACACATGCAACCAAAGCAATATACAGATGGTTGCTCTCAGATTATGTCAAAGTTAGTAACATTGCAACAGAAGATATGCTTTACACTGAATCAGACCTGGAAAAAAGTATGGACAAGATTGAAACAATTCATTTTCACCAGGAGAAAGAAGTCAATGGAATAAAATTCTGGTGTTACCATGCAGGTCATGTTCTTGGTGCATCCATGTTCATGATTGAAATTGCCGGAGTAAAGATTCTTTACACTGGTGATTTTTCACGTCAGGAAGATCGTCATCTTATGGCTGCTGAGATTCCCAGTATTTCACCAGATGTCCTTATCATTGAGTCAACATATGGTACTCATATTCATGAAAAACGTGAAGATAGAGAAAACAGGTTTACAAGTACTGTTCATGACATTGTTAATCGTGGTGGACGATGTCTAATTCCTGTATTTGCTCTTGGTCGAGCCCAAGAACTACTTCTTATTCTGGATGAGTACTGGCAGAATCACCCAGAGCTACATGATGTTCCAATCTACTATGCTTCACAACTGGCAAAGAAATGCATGTCAGtGTTCCAGACTTATGTGAATGCCATGaatgataaaataaagaaacagATTGCCATTTCCAATCCGTTTGTTTTCAAACACATATCAAATCTAAAGGGAATTGACCAGTTTGATGATATTGGTCCGTCTGTGGTGATGGCAAGTCCAGGAATGATGCAGAGCGGTTTGTCACGCGAGCTGTTTGAGCAGTGGTGTACTGATCGTAGAAATGGTGTAATCATCGCCGGCTATTGTGTGGAGGGAACACTGGCGAAGACCCTGATGTCTGAACCTGAAGAGATTGCTACCATGACGGGACAGAAGATTCCTCGGAAGTGCTCCATCGATTACATTTCATTCTCAGCTCACACTGATTTTGAACAGACCAGTGAATTCATTCGAATTCTTAAGCCTCCTCACATTGTACTTGTACACGGTGAGCAAAATGAGATGGGCCGACTCAAGGCTGCTCTTATCCGAGAGTACGAGGACAACCCGGACGCGAGTGTAGTGGTTCATAACCCCCCTAACACTCAAAGTGTGGAGCTTTACTTCAGGGGGGAGAAGATGGCAAAGGTGATGGGAAGTTTAGCGGCGGAAAAGCCTGAACATGGAAAACCTTTGTCTGGGATTCTGATCAAGCGTGGCTTTAACTATCATTTGATTGGGCCAGATGATTTACAAAATTACACCGAACTTTCAACAAGTGTACTTACTCAGaAGCAGACAGTGGCTTTTCATGGCGCTTTCTCTCTGCTTCTTCAATGCTTGGAGAACTTGGCTGGCGAAGTGGAGCAGCTCACGCTTCAAGGAGGAAAACTAGCGCTGAAAGTTTTTAAGGCCATCACTATAATCCAAGAGAAAAGGAGCGTTACTGTGGAGTGGGTGGCTAATCCCGTAAATGACATGTACGCTGATGCTGTTCTAGCAGTGATTTTACAAGTTGAATCCAATCCTACTGCAGCTCAAGttgcTCGCTCCAAGAAGTCTGACTTGAGCAAGTTTCCTGAAAAACTGGTGACACTTTTAAGGGGAACTTATGGTAACGAAGCAGTAACTCGAACCACAAAAGGTGACCAGATATCCGTGCGACTGGACGGACAAACAGCTGTTATCAACCTTGATACTCTGGAAGTGGATTGCCTTGATGAAAGTTTACACAGCCATGTTTCATCTGCAGTGAAGCGTCTTCATAATGCCATGGCTCCATGTCACCCTTGAGACTTCCCTTGTTCATTCAATCTTACAGATTTTTCTCATCTGGGTCTGAAAAAAGAACACTTAAACTCTTTAAGACAAGCCGGCTTTATAGGATAGCGAGCATTCTTAAAGCGACCCACGCTTATTCAAAAGAAGTGAGAGATTGGAGTTGTTAAGCCTTTCAATATGTACTGAAACATTCATTCGTTTCGGCTCGTTCAACGGCGACGTAAATTTCAGTATTAGGCTATTTTTTCTACGAAGGAATTCAAGTCCATCagtgcaaagtaaacttgtcttTAAGGGGCGGTTGGAGGAGGGAGGTGAAGAAAAATCGTTGTGAAAGTGTTCTGTTAATGAATACAGCGTCCTGACTTAACTTATTATAAAGTTGTCTTTGTTGTCTACTATTTCTAGcgaagaaaaaaagatgaaGTAAACCCTGTCTTTTCCTTAGTAACGATTTTTCATATTCCTTGCTCACTTTTCTAGGAAGTGTTTTCTCGAGGCTTGCTTCCTGTCCTTTACGACTAATTTCAGGGTTTACATTTCGAAATAAAGCACTAACACTTTGGATATTCTGAAGAAGTTTCATTAAATTGGAAATGAGAATATGGTTTGGGAAACTCTCTGTGAGCTGTACTTCGCCGCGCGACACTCCTCGTTGGAGGGTCTGGGAGGAATTTAAGGAGGAACGTGGCCTGACGAGACAAAGGACGACTGTCGGAGGGGGTGTGGGGGTTACAAAGCTTATACTTTCCTGATACTGCCAATATTTGAGGGTCTCCAGTACTTTTTCGGGATCTGGGATCTGTGTCATCTGGAAACGGGATTTGGGATTAAGAACATCGAAGGCCCCCCTTACGCGAAAAAAGGAGGCCAAAAACCATCTGGTTAAGAACAGTGATGAAAGAGCTGAAGGAGTTGGGTTTAACATGGTTTAAAGCACAGGCCAAAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07521 all species →	RMMBL	Zn-dependent metallo-hydrolase RNA specificity domain	Motif	Interproscan
PF16661 all species →	Lactamase_B_6	Metallo-beta-lactamase superfamily domain	Domain	Interproscan
PF11718 all species →	CPSF73-100_C	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term	Domain	Interproscan
PF10996 all species →	Beta-Casp	Beta-Casp domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021718 all species →	Domain	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term	Interproscan
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR011108 all species →	Domain	Zn-dependent metallo-hydrolase, RNA specificity domain	Interproscan
IPR022712 all species →	Domain	Beta-Casp domain	Interproscan
IPR001279 all species →	Domain	Metallo-beta-lactamase	Interproscan
IPR050698 all species →	Family	RNA Processing Metallo-Beta-Lactamase Domain-Containing Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11203 all species →	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0004534 all species →	Molecular Function	5'-3' RNA exonuclease activity	Interproscan
GO:0005847 all species →	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0006398 all species →	Biological Process	mRNA 3'-end processing by stem-loop binding and cleavage	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14403	CPSF3, YSH1; cleavage and polyadenylation specificity factor subunit 3	EC:3.1.27.-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.