Detailed information of ENSNQRP00000017141.1 in Porites lobata

Genomic Location: Porites_lobata_contig_33:2320643...2336733
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003818 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00397
all species →
WWWW domainDomainInterproscan
PF00856
all species →
SETSET domainFamilyInterproscan
PF08236
all species →
SRISRI (Set2 Rpb1 interacting) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035441
all species →
Homologous_superfamilyTFIIS/LEDGF domain superfamilyInterproscan
IPR001214
all species →
DomainSET domainInterproscan
IPR001202
all species →
DomainWW domainInterproscan
IPR042294
all species →
FamilyHistone-lysine N-methyltransferase SETD2, animalInterproscan
IPR046341
all species →
Homologous_superfamilySET domain superfamilyInterproscan
IPR038190
all species →
Homologous_superfamilySet2 Rpb1 interacting domain superfamilyInterproscan
IPR003616
all species →
DomainPost-SET domainInterproscan
IPR013257
all species →
DomainSet2 Rpb1 interacting domainInterproscan
IPR036020
all species →
Homologous_superfamilyWW domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46711
all species →
HISTONE-LYSINE N-METHYLTRANSFERASE SETD2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0016279
all species →
Molecular Functionprotein-lysine N-methyltransferase activityInterproscan
GO:0046975
all species →
Molecular Functionhistone H3K36 methyltransferase activityInterproscan
GO:0005694
all species →
Cellular ComponentchromosomeInterproscan
GO:0006355
all species →
Biological Processregulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSNQRP00000017141.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites lobata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites lobata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP